262 related articles for article (PubMed ID: 23407591)
21. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
[TBL] [Abstract][Full Text] [Related]
22. Remote homology and the functions of metagenomic dark matter.
Lobb B; Kurtz DA; Moreno-Hagelsieb G; Doxey AC
Front Genet; 2015; 6():234. PubMed ID: 26257768
[TBL] [Abstract][Full Text] [Related]
23. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures.
Pride DT; Schoenfeld T
BMC Genomics; 2008 Sep; 9():420. PubMed ID: 18798991
[TBL] [Abstract][Full Text] [Related]
24. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.
Treiber ML; Taft DH; Korf I; Mills DA; Lemay DG
BMC Bioinformatics; 2020 Feb; 21(1):74. PubMed ID: 32093654
[TBL] [Abstract][Full Text] [Related]
25. Critical Assessment of Whole Genome and Viral Enrichment Shotgun Metagenome on the Characterization of Stool Total Virome in Hepatocellular Carcinoma Patients.
Zhang F; Gia A; Chen G; Gong L; Behary J; Hold GL; Zekry A; Tang X; Sun Y; El-Omar E; Jiang XT
Viruses; 2022 Dec; 15(1):. PubMed ID: 36680094
[TBL] [Abstract][Full Text] [Related]
26. Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries.
Asplund M; Kjartansdóttir KR; Mollerup S; Vinner L; Fridholm H; Herrera JAR; Friis-Nielsen J; Hansen TA; Jensen RH; Nielsen IB; Richter SR; Rey-Iglesia A; Matey-Hernandez ML; Alquezar-Planas DE; Olsen PVS; Sicheritz-Pontén T; Willerslev E; Lund O; Brunak S; Mourier T; Nielsen LP; Izarzugaza JMG; Hansen AJ
Clin Microbiol Infect; 2019 Oct; 25(10):1277-1285. PubMed ID: 31059795
[TBL] [Abstract][Full Text] [Related]
27. [Virome: the next hotspot in microbiome research].
Zhang Y; Cao J; Zhao N; Wang J
Sheng Wu Gong Cheng Xue Bao; 2020 Dec; 36(12):2566-2581. PubMed ID: 33398955
[TBL] [Abstract][Full Text] [Related]
28. Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.
Lin J; Kramna L; Autio R; Hyöty H; Nykter M; Cinek O
BMC Genomics; 2017 May; 18(1):378. PubMed ID: 28506246
[TBL] [Abstract][Full Text] [Related]
29. Counts and sequences, observations that continue to change our understanding of viruses in nature.
Wommack KE; Nasko DJ; Chopyk J; Sakowski EG
J Microbiol; 2015 Mar; 53(3):181-92. PubMed ID: 25732739
[TBL] [Abstract][Full Text] [Related]
30. Virome-associated antibiotic-resistance genes in an experimental aquaculture facility.
Colombo S; Arioli S; Guglielmetti S; Lunelli F; Mora D
FEMS Microbiol Ecol; 2016 Mar; 92(3):. PubMed ID: 26738553
[TBL] [Abstract][Full Text] [Related]
31. Choice of assembly software has a critical impact on virome characterisation.
Sutton TDS; Clooney AG; Ryan FJ; Ross RP; Hill C
Microbiome; 2019 Jan; 7(1):12. PubMed ID: 30691529
[TBL] [Abstract][Full Text] [Related]
32. The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.
Hannigan GD; Meisel JS; Tyldsley AS; Zheng Q; Hodkinson BP; SanMiguel AJ; Minot S; Bushman FD; Grice EA
mBio; 2015 Oct; 6(5):e01578-15. PubMed ID: 26489866
[TBL] [Abstract][Full Text] [Related]
33. Metagenomics: Probing pollutant fate in natural and engineered ecosystems.
Bouhajja E; Agathos SN; George IF
Biotechnol Adv; 2016 Dec; 34(8):1413-1426. PubMed ID: 27825829
[TBL] [Abstract][Full Text] [Related]
34. Metaviromics coupled with phage-host identification to open the viral 'black box'.
Moon K; Cho JC
J Microbiol; 2021 Mar; 59(3):311-323. PubMed ID: 33624268
[TBL] [Abstract][Full Text] [Related]
35. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
36. Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes.
Moon K; Jeon JH; Kang I; Park KS; Lee K; Cha CJ; Lee SH; Cho JC
Microbiome; 2020 Jun; 8(1):75. PubMed ID: 32482165
[TBL] [Abstract][Full Text] [Related]
37. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
[TBL] [Abstract][Full Text] [Related]
38. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
Zhu Q; Huang S; Gonzalez A; McGrath I; McDonald D; Haiminen N; Armstrong G; Vázquez-Baeza Y; Yu J; Kuczynski J; Sepich-Poore GD; Swafford AD; Das P; Shaffer JP; Lejzerowicz F; Belda-Ferre P; Havulinna AS; Méric G; Niiranen T; Lahti L; Salomaa V; Kim HC; Jain M; Inouye M; Gilbert JA; Knight R
mSystems; 2022 Apr; 7(2):e0016722. PubMed ID: 35369727
[TBL] [Abstract][Full Text] [Related]
39. P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.
Ortet P; De Luca G; Whitworth DE; Barakat M
BMC Genomics; 2012 Nov; 13():628. PubMed ID: 23153078
[TBL] [Abstract][Full Text] [Related]
40. GLOSSary: the GLobal Ocean 16S subunit web accessible resource.
Tangherlini M; Miralto M; Colantuono C; Sangiovanni M; Dell' Anno A; Corinaldesi C; Danovaro R; Chiusano ML
BMC Bioinformatics; 2018 Nov; 19(Suppl 15):443. PubMed ID: 30497362
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
