These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
132 related articles for article (PubMed ID: 23409927)
1. A statistical thin-tail test of predicting regulatory regions in the Drosophila genome. Shu JJ; Li Y Theor Biol Med Model; 2013 Feb; 10():11. PubMed ID: 23409927 [TBL] [Abstract][Full Text] [Related]
2. A statistical fat-tail test of predicting regulatory regions in the Drosophila genome. Shu JJ; Li Y Comput Biol Med; 2012 Sep; 42(9):935-41. PubMed ID: 22884312 [TBL] [Abstract][Full Text] [Related]
3. Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs. Girgis HZ; Ovcharenko I BMC Bioinformatics; 2012 Feb; 13():25. PubMed ID: 22313678 [TBL] [Abstract][Full Text] [Related]
4. Assessing computational methods of cis-regulatory module prediction. Su J; Teichmann SA; Down TA PLoS Comput Biol; 2010 Dec; 6(12):e1001020. PubMed ID: 21152003 [TBL] [Abstract][Full Text] [Related]
5. Using hexamers to predict cis-regulatory motifs in Drosophila. Chan BY; Kibler D BMC Bioinformatics; 2005 Oct; 6():262. PubMed ID: 16253142 [TBL] [Abstract][Full Text] [Related]
6. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets. Niu M; Tabari ES; Su Z BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502 [TBL] [Abstract][Full Text] [Related]
7. cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila. Yang TH; Wang CC; Hung PC; Wu WS BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S8. PubMed ID: 25521507 [TBL] [Abstract][Full Text] [Related]
8. Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison. Kazemian M; Zhu Q; Halfon MS; Sinha S Nucleic Acids Res; 2011 Dec; 39(22):9463-72. PubMed ID: 21821659 [TBL] [Abstract][Full Text] [Related]
9. Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Grad YH; Roth FP; Halfon MS; Church GM Bioinformatics; 2004 Nov; 20(16):2738-50. PubMed ID: 15145800 [TBL] [Abstract][Full Text] [Related]
11. Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency. Nazina AG; Papatsenko DA BMC Bioinformatics; 2003 Dec; 4():65. PubMed ID: 14690551 [TBL] [Abstract][Full Text] [Related]
12. Accurate prediction of Ni P; Su Z NAR Genom Bioinform; 2021 Jun; 3(2):lqab052. PubMed ID: 34159315 [No Abstract] [Full Text] [Related]
13. Exploring a Mahmud AKMF; Yang D; Stenberg P; Ioshikhes I; Nandi S J Comput Biol; 2020 Aug; 27(8):1313-1328. PubMed ID: 31855461 [No Abstract] [Full Text] [Related]
14. Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test. Abnizova I; te Boekhorst R; Walter K; Gilks WR BMC Bioinformatics; 2005 Apr; 6():109. PubMed ID: 15857505 [TBL] [Abstract][Full Text] [Related]
15. Evolution of regulatory sequences in 12 Drosophila species. Kim J; He X; Sinha S PLoS Genet; 2009 Jan; 5(1):e1000330. PubMed ID: 19132088 [TBL] [Abstract][Full Text] [Related]
16. Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice. Ni P; Moe J; Su Z BMC Biol; 2022 Oct; 20(1):221. PubMed ID: 36199141 [TBL] [Abstract][Full Text] [Related]
17. A novel method for predicting activity of cis-regulatory modules, based on a diverse training set. Yang W; Sinha S Bioinformatics; 2017 Jan; 33(1):1-7. PubMed ID: 27609510 [TBL] [Abstract][Full Text] [Related]
18. Cis-regulatory sequences in plants: Their importance, discovery, and future challenges. Schmitz RJ; Grotewold E; Stam M Plant Cell; 2022 Feb; 34(2):718-741. PubMed ID: 34918159 [TBL] [Abstract][Full Text] [Related]
19. Imogene: identification of motifs and cis-regulatory modules underlying gene co-regulation. Rouault H; Santolini M; Schweisguth F; Hakim V Nucleic Acids Res; 2014 Jun; 42(10):6128-45. PubMed ID: 24682824 [TBL] [Abstract][Full Text] [Related]
20. Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression. Dunipace L; Ozdemir A; Stathopoulos A Development; 2011 Sep; 138(18):4075-84. PubMed ID: 21813571 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]