426 related articles for article (PubMed ID: 23416197)
1. Consensus among multiple approaches as a reliability measure for flexible fitting into cryo-EM data.
Ahmed A; Tama F
J Struct Biol; 2013 May; 182(2):67-77. PubMed ID: 23416197
[TBL] [Abstract][Full Text] [Related]
2. Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.
Ahmed A; Whitford PC; Sanbonmatsu KY; Tama F
J Struct Biol; 2012 Feb; 177(2):561-70. PubMed ID: 22019767
[TBL] [Abstract][Full Text] [Related]
3. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.
Tama F; Miyashita O; Brooks CL
J Struct Biol; 2004 Sep; 147(3):315-26. PubMed ID: 15450300
[TBL] [Abstract][Full Text] [Related]
4. Integration of cryo-EM with atomic and protein-protein interaction data.
Förster F; Villa E
Methods Enzymol; 2010; 483():47-72. PubMed ID: 20888469
[TBL] [Abstract][Full Text] [Related]
5. Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.
Dou H; Burrows DW; Baker ML; Ju T
Biophys J; 2017 Jun; 112(12):2479-2493. PubMed ID: 28636906
[TBL] [Abstract][Full Text] [Related]
6. A fragment based method for modeling of protein segments into cryo-EM density maps.
Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
[TBL] [Abstract][Full Text] [Related]
7. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
Rakesh R; Srinivasan N
Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
[TBL] [Abstract][Full Text] [Related]
8. EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.
Lasker K; Dror O; Shatsky M; Nussinov R; Wolfson HJ
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):28-39. PubMed ID: 17277411
[TBL] [Abstract][Full Text] [Related]
9. Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited.
Sorzano CO; Alcorlo M; de la Rosa-Trevín JM; Melero R; Foche I; Zaldívar-Peraza A; del Cano L; Vargas J; Abrishami V; Otón J; Marabini R; Carazo JM
Sci Rep; 2015 Sep; 5():14290. PubMed ID: 26390853
[TBL] [Abstract][Full Text] [Related]
10. A blind deconvolution approach for improving the resolution of cryo-EM density maps.
Hirsch M; Schölkopf B; Habeck M
J Comput Biol; 2011 Mar; 18(3):335-46. PubMed ID: 21385038
[TBL] [Abstract][Full Text] [Related]
11. Cryo electron microscopy to determine the structure of macromolecular complexes.
Carroni M; Saibil HR
Methods; 2016 Feb; 95():78-85. PubMed ID: 26638773
[TBL] [Abstract][Full Text] [Related]
12. Cryo_fit: Democratization of flexible fitting for cryo-EM.
Kim DN; Moriarty NW; Kirmizialtin S; Afonine PV; Poon B; Sobolev OV; Adams PD; Sanbonmatsu K
J Struct Biol; 2019 Oct; 208(1):1-6. PubMed ID: 31279069
[TBL] [Abstract][Full Text] [Related]
13. Finding the right fit: chiseling structures out of cryo-electron microscopy maps.
Villa E; Lasker K
Curr Opin Struct Biol; 2014 Apr; 25():118-25. PubMed ID: 24814094
[TBL] [Abstract][Full Text] [Related]
14. Accurate flexible fitting of high-resolution protein structures into cryo-electron microscopy maps using coarse-grained pseudo-energy minimization.
Zheng W
Biophys J; 2011 Jan; 100(2):478-88. PubMed ID: 21244844
[TBL] [Abstract][Full Text] [Related]
15. Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations.
Orzechowski M; Tama F
Biophys J; 2008 Dec; 95(12):5692-705. PubMed ID: 18849406
[TBL] [Abstract][Full Text] [Related]
16. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Wang RY; Song Y; Barad BA; Cheng Y; Fraser JS; DiMaio F
Elife; 2016 Sep; 5():. PubMed ID: 27669148
[TBL] [Abstract][Full Text] [Related]
17. Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs.
Norousi R; Wickles S; Leidig C; Becker T; Schmid VJ; Beckmann R; Tresch A
J Struct Biol; 2013 May; 182(2):59-66. PubMed ID: 23454482
[TBL] [Abstract][Full Text] [Related]
18. Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps.
Grubisic I; Shokhirev MN; Orzechowski M; Miyashita O; Tama F
J Struct Biol; 2010 Jan; 169(1):95-105. PubMed ID: 19800974
[TBL] [Abstract][Full Text] [Related]
19. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP.
Chojnowski G; Sobolev E; Heuser P; Lamzin VS
Acta Crystallogr D Struct Biol; 2021 Feb; 77(Pt 2):142-150. PubMed ID: 33559604
[TBL] [Abstract][Full Text] [Related]
20. Numerical geometry of map and model assessment.
Wriggers W; He J
J Struct Biol; 2015 Nov; 192(2):255-61. PubMed ID: 26416532
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
