169 related articles for article (PubMed ID: 23424115)
1. Epigenomic model of cardiac enhancers with application to genome wide association studies.
Sahu AD; Aniba R; Chang YP; Hannenhalli S
Pac Symp Biocomput; 2013; ():92-102. PubMed ID: 23424115
[TBL] [Abstract][Full Text] [Related]
2. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.
He A; Kong SW; Ma Q; Pu WT
Proc Natl Acad Sci U S A; 2011 Apr; 108(14):5632-7. PubMed ID: 21415370
[TBL] [Abstract][Full Text] [Related]
3. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
Chen CY; Morris Q; Mitchell JA
BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
[TBL] [Abstract][Full Text] [Related]
4. Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.
Kim SG; Theera-Ampornpunt N; Fang CH; Harwani M; Grama A; Chaterji S
BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):54. PubMed ID: 27490187
[TBL] [Abstract][Full Text] [Related]
5. Bridging between Mouse and Human Enhancer-Promoter Long-Range Interactions in Neural Stem Cells, to Understand Enhancer Function in Neurodevelopmental Disease.
D'Aurizio R; Catona O; Pitasi M; Li YE; Ren B; Nicolis SK
Int J Mol Sci; 2022 Jul; 23(14):. PubMed ID: 35887306
[TBL] [Abstract][Full Text] [Related]
6. Integrating diverse datasets improves developmental enhancer prediction.
Erwin GD; Oksenberg N; Truty RM; Kostka D; Murphy KK; Ahituv N; Pollard KS; Capra JA
PLoS Comput Biol; 2014 Jun; 10(6):e1003677. PubMed ID: 24967590
[TBL] [Abstract][Full Text] [Related]
7. Local epigenomic state cannot discriminate interacting and non-interacting enhancer-promoter pairs with high accuracy.
Xi W; Beer MA
PLoS Comput Biol; 2018 Dec; 14(12):e1006625. PubMed ID: 30562350
[TBL] [Abstract][Full Text] [Related]
8. Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.
Li WV; Razaee ZS; Li JJ
BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):10. PubMed ID: 26817822
[TBL] [Abstract][Full Text] [Related]
9. Allele-specific enhancers mediate associations between LCAT and ABCA1 polymorphisms and HDL metabolism.
Howard AD; Wang X; Prasad M; Sahu AD; Aniba R; Miller M; Hannenhalli S; Chang YC
PLoS One; 2019; 14(4):e0215911. PubMed ID: 31039173
[TBL] [Abstract][Full Text] [Related]
10. Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.
Wang M; Hancock TP; MacLeod IM; Pryce JE; Cocks BG; Hayes BJ
Genet Sel Evol; 2017 Jul; 49(1):56. PubMed ID: 28683716
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide maps of distal gene regulatory enhancers active in the human placenta.
Zhang J; Simonti CN; Capra JA
PLoS One; 2018; 13(12):e0209611. PubMed ID: 30589856
[TBL] [Abstract][Full Text] [Related]
12. Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers.
Teng L; Firpi HA; Tan K
Nucleic Acids Res; 2011 Sep; 39(17):7371-9. PubMed ID: 21685454
[TBL] [Abstract][Full Text] [Related]
13. Identification of biologically relevant enhancers in human erythroid cells.
Su MY; Steiner LA; Bogardus H; Mishra T; Schulz VP; Hardison RC; Gallagher PG
J Biol Chem; 2013 Mar; 288(12):8433-8444. PubMed ID: 23341446
[TBL] [Abstract][Full Text] [Related]
14. Functional annotation of colon cancer risk SNPs.
Yao L; Tak YG; Berman BP; Farnham PJ
Nat Commun; 2014 Sep; 5():5114. PubMed ID: 25268989
[TBL] [Abstract][Full Text] [Related]
15. ChIP-Seq identification of weakly conserved heart enhancers.
Blow MJ; McCulley DJ; Li Z; Zhang T; Akiyama JA; Holt A; Plajzer-Frick I; Shoukry M; Wright C; Chen F; Afzal V; Bristow J; Ren B; Black BL; Rubin EM; Visel A; Pennacchio LA
Nat Genet; 2010 Sep; 42(9):806-10. PubMed ID: 20729851
[TBL] [Abstract][Full Text] [Related]
16. Large-scale discovery of enhancers from human heart tissue.
May D; Blow MJ; Kaplan T; McCulley DJ; Jensen BC; Akiyama JA; Holt A; Plajzer-Frick I; Shoukry M; Wright C; Afzal V; Simpson PC; Rubin EM; Black BL; Bristow J; Pennacchio LA; Visel A
Nat Genet; 2011 Dec; 44(1):89-93. PubMed ID: 22138689
[TBL] [Abstract][Full Text] [Related]
17. Genetic variation in T-box binding element functionally affects SCN5A/SCN10A enhancer.
van den Boogaard M; Wong LY; Tessadori F; Bakker ML; Dreizehnter LK; Wakker V; Bezzina CR; 't Hoen PA; Bakkers J; Barnett P; Christoffels VM
J Clin Invest; 2012 Jul; 122(7):2519-30. PubMed ID: 22706305
[TBL] [Abstract][Full Text] [Related]
18. Genome-wide analysis of PDX1 target genes in human pancreatic progenitors.
Wang X; Sterr M; Burtscher I; Chen S; Hieronimus A; Machicao F; Staiger H; Häring HU; Lederer G; Meitinger T; Cernilogar FM; Schotta G; Irmler M; Beckers J; Hrabě de Angelis M; Ray M; Wright CVE; Bakhti M; Lickert H
Mol Metab; 2018 Mar; 9():57-68. PubMed ID: 29396371
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide analysis of functional and evolutionary features of tele-enhancers.
Huang D; Ovcharenko I
G3 (Bethesda); 2014 Apr; 4(4):579-93. PubMed ID: 24496725
[TBL] [Abstract][Full Text] [Related]
20. Computational schemes for the prediction and annotation of enhancers from epigenomic assays.
Whitaker JW; Nguyen TT; Zhu Y; Wildberg A; Wang W
Methods; 2015 Jan; 72():86-94. PubMed ID: 25461775
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]