BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

115 related articles for article (PubMed ID: 23424136)

  • 1. LSHPlace: fast phylogenetic placement using locality-sensitive hashing.
    Brown DG; Truszkowski J
    Pac Symp Biocomput; 2013; ():310-9. PubMed ID: 23424136
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SEPP: SATé-enabled phylogenetic placement.
    Mirarab S; Nguyen N; Warnow T
    Pac Symp Biocomput; 2012; ():247-58. PubMed ID: 22174280
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetaDomain: a profile HMM-based protein domain classification tool for short sequences.
    Zhang Y; Sun Y
    Pac Symp Biocomput; 2012; ():271-82. PubMed ID: 22174282
    [TBL] [Abstract][Full Text] [Related]  

  • 4. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phylogenetic placement of metagenomic reads using the minimum evolution principle.
    Filipski A; Tamura K; Billing-Ross P; Murillo O; Kumar S
    BMC Genomics; 2015; 16 Suppl 1(Suppl 1):S13. PubMed ID: 25923672
    [TBL] [Abstract][Full Text] [Related]  

  • 6. New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
    Whelan S
    Syst Biol; 2007 Oct; 56(5):727-40. PubMed ID: 17849327
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.
    Mirarab S; Nguyen N; Guo S; Wang LS; Kim J; Warnow T
    J Comput Biol; 2015 May; 22(5):377-86. PubMed ID: 25549288
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies.
    Coarfa C; Milosavljevic A
    Pac Symp Biocomput; 2008; ():102-13. PubMed ID: 18229679
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
    Fouquier J; Rideout JR; Bolyen E; Chase J; Shiffer A; McDonald D; Knight R; Caporaso JG; Kelley ST
    Microbiome; 2016 Feb; 4():11. PubMed ID: 26905735
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Toward extracting all phylogenetic information from matrices of evolutionary distances.
    Roch S
    Science; 2010 Mar; 327(5971):1376-9. PubMed ID: 20223986
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Parametric analysis of alignment and phylogenetic uncertainty.
    Malaspinas AS; Eriksson N; Huggins P
    Bull Math Biol; 2011 Apr; 73(4):795-810. PubMed ID: 21409513
    [TBL] [Abstract][Full Text] [Related]  

  • 15. QuickJoin--fast neighbour-joining tree reconstruction.
    Mailund T; Pedersen CN
    Bioinformatics; 2004 Nov; 20(17):3261-2. PubMed ID: 15201185
    [TBL] [Abstract][Full Text] [Related]  

  • 16. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.
    Matsen FA; Kodner RB; Armbrust EV
    BMC Bioinformatics; 2010 Oct; 11():538. PubMed ID: 21034504
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A review of methods and databases for metagenomic classification and assembly.
    Breitwieser FP; Lu J; Salzberg SL
    Brief Bioinform; 2019 Jul; 20(4):1125-1136. PubMed ID: 29028872
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast and sensitive protein alignment using DIAMOND.
    Buchfink B; Xie C; Huson DH
    Nat Methods; 2015 Jan; 12(1):59-60. PubMed ID: 25402007
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DPRml: distributed phylogeny reconstruction by maximum likelihood.
    Keane TM; Naughton TJ; Travers SA; McInerney JO; McCormack GP
    Bioinformatics; 2005 Apr; 21(7):969-74. PubMed ID: 15513992
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.