187 related articles for article (PubMed ID: 23424620)
21. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Camargo AP; Call L; Roux S; Nayfach S; Huntemann M; Palaniappan K; Ratner A; Chu K; Mukherjeep S; Reddy TBK; Chen IA; Ivanova NN; Eloe-Fadrosh EA; Woyke T; Baltrus DA; Castañeda-Barba S; de la Cruz F; Funnell BE; Hall JPJ; Mukhopadhyay A; Rocha EPC; Stalder T; Top E; Kyrpides NC
Nucleic Acids Res; 2024 Jan; 52(D1):D164-D173. PubMed ID: 37930866
[TBL] [Abstract][Full Text] [Related]
22. IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Camargo AP; Nayfach S; Chen IA; Palaniappan K; Ratner A; Chu K; Ritter SJ; Reddy TBK; Mukherjee S; Schulz F; Call L; Neches RY; Woyke T; Ivanova NN; Eloe-Fadrosh EA; Kyrpides NC; Roux S
Nucleic Acids Res; 2023 Jan; 51(D1):D733-D743. PubMed ID: 36399502
[TBL] [Abstract][Full Text] [Related]
23. CycADS: an annotation database system to ease the development and update of BioCyc databases.
Vellozo AF; Véron AS; Baa-Puyoulet P; Huerta-Cepas J; Cottret L; Febvay G; Calevro F; Rahbé Y; Douglas AE; Gabaldón T; Sagot MF; Charles H; Colella S
Database (Oxford); 2011; 2011():bar008. PubMed ID: 21474551
[TBL] [Abstract][Full Text] [Related]
24. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.
Hadjithomas M; Chen IM; Chu K; Ratner A; Palaniappan K; Szeto E; Huang J; Reddy TB; Cimermančič P; Fischbach MA; Ivanova NN; Markowitz VM; Kyrpides NC; Pati A
mBio; 2015 Jul; 6(4):e00932. PubMed ID: 26173699
[TBL] [Abstract][Full Text] [Related]
25. The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.
Chen IA; Chu K; Palaniappan K; Ratner A; Huang J; Huntemann M; Hajek P; Ritter S; Varghese N; Seshadri R; Roux S; Woyke T; Eloe-Fadrosh EA; Ivanova NN; Kyrpides NC
Nucleic Acids Res; 2021 Jan; 49(D1):D751-D763. PubMed ID: 33119741
[TBL] [Abstract][Full Text] [Related]
26. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Médigue C; Calteau A; Cruveiller S; Gachet M; Gautreau G; Josso A; Lajus A; Langlois J; Pereira H; Planel R; Roche D; Rollin J; Rouy Z; Vallenet D
Brief Bioinform; 2019 Jul; 20(4):1071-1084. PubMed ID: 28968784
[TBL] [Abstract][Full Text] [Related]
27. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
Huntemann M; Ivanova NN; Mavromatis K; Tripp HJ; Paez-Espino D; Palaniappan K; Szeto E; Pillay M; Chen IM; Pati A; Nielsen T; Markowitz VM; Kyrpides NC
Stand Genomic Sci; 2015; 10():86. PubMed ID: 26512311
[TBL] [Abstract][Full Text] [Related]
28. IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase.
Palaniappan K; Chen IA; Chu K; Ratner A; Seshadri R; Kyrpides NC; Ivanova NN; Mouncey NJ
Nucleic Acids Res; 2020 Jan; 48(D1):D422-D430. PubMed ID: 31665416
[TBL] [Abstract][Full Text] [Related]
29. MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Vallenet D; Calteau A; Cruveiller S; Gachet M; Lajus A; Josso A; Mercier J; Renaux A; Rollin J; Rouy Z; Roche D; Scarpelli C; Médigue C
Nucleic Acids Res; 2017 Jan; 45(D1):D517-D528. PubMed ID: 27899624
[TBL] [Abstract][Full Text] [Related]
30. The integrated microbial genome resource of analysis.
Checcucci A; Mengoni A
Methods Mol Biol; 2015; 1231():289-95. PubMed ID: 25343872
[TBL] [Abstract][Full Text] [Related]
31. The IMG/M data management and analysis system v.7: content updates and new features.
Chen IA; Chu K; Palaniappan K; Ratner A; Huang J; Huntemann M; Hajek P; Ritter SJ; Webb C; Wu D; Varghese NJ; Reddy TBK; Mukherjee S; Ovchinnikova G; Nolan M; Seshadri R; Roux S; Visel A; Woyke T; Eloe-Fadrosh EA; Kyrpides NC; Ivanova NN
Nucleic Acids Res; 2023 Jan; 51(D1):D723-D732. PubMed ID: 36382399
[TBL] [Abstract][Full Text] [Related]
32. proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.
Mende DR; Letunic I; Huerta-Cepas J; Li SS; Forslund K; Sunagawa S; Bork P
Nucleic Acids Res; 2017 Jan; 45(D1):D529-D534. PubMed ID: 28053165
[TBL] [Abstract][Full Text] [Related]
33. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
Huntemann M; Ivanova NN; Mavromatis K; Tripp HJ; Paez-Espino D; Tennessen K; Palaniappan K; Szeto E; Pillay M; Chen IM; Pati A; Nielsen T; Markowitz VM; Kyrpides NC
Stand Genomic Sci; 2016; 11():17. PubMed ID: 26918089
[TBL] [Abstract][Full Text] [Related]
34. The genome portal of the Department of Energy Joint Genome Institute.
Grigoriev IV; Nordberg H; Shabalov I; Aerts A; Cantor M; Goodstein D; Kuo A; Minovitsky S; Nikitin R; Ohm RA; Otillar R; Poliakov A; Ratnere I; Riley R; Smirnova T; Rokhsar D; Dubchak I
Nucleic Acids Res; 2012 Jan; 40(Database issue):D26-32. PubMed ID: 22110030
[TBL] [Abstract][Full Text] [Related]
35. IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.
Markowitz VM; Chen IM; Chu K; Szeto E; Palaniappan K; Jacob B; Ratner A; Liolios K; Pagani I; Huntemann M; Mavromatis K; Ivanova NN; Kyrpides NC
PLoS One; 2012; 7(7):e40151. PubMed ID: 22792232
[TBL] [Abstract][Full Text] [Related]
36. BEACON: automated tool for Bacterial GEnome Annotation ComparisON.
Kalkatawi M; Alam I; Bajic VB
BMC Genomics; 2015 Aug; 16(1):616. PubMed ID: 26283419
[TBL] [Abstract][Full Text] [Related]
37. Combining multiple functional annotation tools increases coverage of metabolic annotation.
Griesemer M; Kimbrel JA; Zhou CE; Navid A; D'haeseleer P
BMC Genomics; 2018 Dec; 19(1):948. PubMed ID: 30567498
[TBL] [Abstract][Full Text] [Related]
38. IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.
Paez-Espino D; Roux S; Chen IA; Palaniappan K; Ratner A; Chu K; Huntemann M; Reddy TBK; Pons JC; Llabrés M; Eloe-Fadrosh EA; Ivanova NN; Kyrpides NC
Nucleic Acids Res; 2019 Jan; 47(D1):D678-D686. PubMed ID: 30407573
[TBL] [Abstract][Full Text] [Related]
39. MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Vallenet D; Belda E; Calteau A; Cruveiller S; Engelen S; Lajus A; Le Fèvre F; Longin C; Mornico D; Roche D; Rouy Z; Salvignol G; Scarpelli C; Thil Smith AA; Weiman M; Médigue C
Nucleic Acids Res; 2013 Jan; 41(Database issue):D636-47. PubMed ID: 23193269
[TBL] [Abstract][Full Text] [Related]
40.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Previous] [Next] [New Search]
