These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

203 related articles for article (PubMed ID: 23457040)

  • 101. scRNAss: a single-cell RNA-seq assembler via imputing dropouts and combing junctions.
    Liu J; Liu X; Ren X; Li G
    Bioinformatics; 2019 Nov; 35(21):4264-4271. PubMed ID: 30951147
    [TBL] [Abstract][Full Text] [Related]  

  • 102. Quality control of single-cell RNA-seq by SinQC.
    Jiang P; Thomson JA; Stewart R
    Bioinformatics; 2016 Aug; 32(16):2514-6. PubMed ID: 27153613
    [TBL] [Abstract][Full Text] [Related]  

  • 103. In silico read normalization using set multi-cover optimization.
    Durai DA; Schulz MH
    Bioinformatics; 2018 Oct; 34(19):3273-3280. PubMed ID: 29912280
    [TBL] [Abstract][Full Text] [Related]  

  • 104. KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
    Sacomoto GA; Kielbassa J; Chikhi R; Uricaru R; Antoniou P; Sagot MF; Peterlongo P; Lacroix V
    BMC Bioinformatics; 2012 Apr; 13 Suppl 6(Suppl 6):S5. PubMed ID: 22537044
    [TBL] [Abstract][Full Text] [Related]  

  • 105. ImpulseDE: detection of differentially expressed genes in time series data using impulse models.
    Sander J; Schultze JL; Yosef N
    Bioinformatics; 2017 Mar; 33(5):757-759. PubMed ID: 27797772
    [TBL] [Abstract][Full Text] [Related]  

  • 106. A Guide to Sequencing for Long Repetitive Regions.
    Kono N
    Methods Mol Biol; 2023; 2632():131-146. PubMed ID: 36781726
    [TBL] [Abstract][Full Text] [Related]  

  • 107. A multi-sample approach increases the accuracy of transcript assembly.
    Song L; Sabunciyan S; Yang G; Florea L
    Nat Commun; 2019 Nov; 10(1):5000. PubMed ID: 31676772
    [TBL] [Abstract][Full Text] [Related]  

  • 108. Rascaf: Improving Genome Assembly with RNA Sequencing Data.
    Song L; Shankar DS; Florea L
    Plant Genome; 2016 Nov; 9(3):. PubMed ID: 27902792
    [TBL] [Abstract][Full Text] [Related]  

  • 109. A tool for RNA sequencing sample identity check.
    Huang J; Chen J; Lathrop M; Liang L
    Bioinformatics; 2013 Jun; 29(11):1463-4. PubMed ID: 23559639
    [TBL] [Abstract][Full Text] [Related]  

  • 110. pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments.
    Uvarovskii A; Dieterich C
    Bioinformatics; 2017 Oct; 33(20):3305-3307. PubMed ID: 29028260
    [TBL] [Abstract][Full Text] [Related]  

  • 111. RNAbrowse: RNA-Seq de novo assembly results browser.
    Mariette J; Noirot C; Nabihoudine I; Bardou P; Hoede C; Djari A; Cabau C; Klopp C
    PLoS One; 2014; 9(5):e96821. PubMed ID: 24823498
    [TBL] [Abstract][Full Text] [Related]  

  • 112. SQUID: transcriptomic structural variation detection from RNA-seq.
    Ma C; Shao M; Kingsford C
    Genome Biol; 2018 Apr; 19(1):52. PubMed ID: 29650026
    [TBL] [Abstract][Full Text] [Related]  

  • 113. Leveraging multiple transcriptome assembly methods for improved gene structure annotation.
    Venturini L; Caim S; Kaithakottil GG; Mapleson DL; Swarbreck D
    Gigascience; 2018 Aug; 7(8):. PubMed ID: 30052957
    [TBL] [Abstract][Full Text] [Related]  

  • 114. LSTrAP-denovo: Automated Generation of Transcriptome Atlases for Eukaryotic Species Without Genomes.
    Lim PK; Wang R; Mutwil M
    Physiol Plant; 2024; 176(4):e14407. PubMed ID: 38973613
    [TBL] [Abstract][Full Text] [Related]  

  • 115. samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files.
    Stupnikov A; Tripathi S; de Matos Simoes R; McArt D; Salto-Tellez M; Glazko G; Dehmer M; Emmert-Streib F
    Bioinformatics; 2016 Nov; 32(21):3345-3347. PubMed ID: 27402900
    [TBL] [Abstract][Full Text] [Related]  

  • 116. Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq.
    Juliá M; Telenti A; Rausell A
    Bioinformatics; 2015 Oct; 31(20):3380-2. PubMed ID: 26099264
    [TBL] [Abstract][Full Text] [Related]  

  • 117. A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.
    Mbandi SK; Hesse U; Rees DJ; Christoffels A
    Front Genet; 2014; 5():17. PubMed ID: 24575122
    [TBL] [Abstract][Full Text] [Related]  

  • 118. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
    Pertea M; Pertea GM; Antonescu CM; Chang TC; Mendell JT; Salzberg SL
    Nat Biotechnol; 2015 Mar; 33(3):290-5. PubMed ID: 25690850
    [TBL] [Abstract][Full Text] [Related]  

  • 119. Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes.
    Sahli M; Shibuya T
    BMC Res Notes; 2012 May; 5():243. PubMed ID: 22591859
    [TBL] [Abstract][Full Text] [Related]  

  • 120. Accurate assembly of multiple RNA-seq samples with Aletsch.
    Shi Q; Zhang Q; Shao M
    Bioinformatics; 2024 Jun; 40(Supplement_1):i307-i317. PubMed ID: 38940157
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.