These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 23471471)

  • 1. An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data.
    Saeed F; Pisitkun T; Knepper MA; Hoffert JD
    Proceedings (IEEE Int Conf Bioinformatics Biomed); 2012 Oct; ():1-4. PubMed ID: 23471471
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling.
    Saeed F; Hoffert JD; Knepper MA
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):128-41. PubMed ID: 26355513
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exploiting Thread-Level and Instruction-Level Parallelism to Cluster Mass Spectrometry Data using Multicore Architectures.
    Saeed F; Hoffert JD; Pisitkun T; Knepper MA
    Netw Model Anal Health Inform Bioinform; 2014 Apr; 3():54. PubMed ID: 25045604
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data.
    Saeed F; Pisitkun T; Hoffert JD; Wang G; Gucek M; Knepper MA
    Proceedings (IEEE Int Conf Bioinformatics Biomed); 2012 Oct; ():618-625. PubMed ID: 23471519
    [TBL] [Abstract][Full Text] [Related]  

  • 5. msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.
    Wang L; Li S; Tang H
    J Proteome Res; 2019 Jan; 18(1):147-158. PubMed ID: 30511858
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra.
    Rieder V; Schork KU; Kerschke L; Blank-Landeshammer B; Sickmann A; Rahnenführer J
    J Proteome Res; 2017 Nov; 16(11):4035-4044. PubMed ID: 28959885
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides.
    Toghi Eshghi S; Shah P; Yang W; Li X; Zhang H
    Anal Chem; 2015; 87(10):5181-8. PubMed ID: 25945896
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Clustering millions of tandem mass spectra.
    Frank AM; Bandeira N; Shen Z; Tanner S; Briggs SP; Smith RD; Pevzner PA
    J Proteome Res; 2008 Jan; 7(1):113-22. PubMed ID: 18067247
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.
    Saeed F; Pisitkun T; Hoffert JD; Rashidian S; Wang G; Gucek M; Knepper MA
    Proteome Sci; 2013 Nov; 11(Suppl 1):S14. PubMed ID: 24565028
    [TBL] [Abstract][Full Text] [Related]  

  • 10. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
    J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.
    Tabb DL; Thompson MR; Khalsa-Moyers G; VerBerkmoes NC; McDonald WH
    J Am Soc Mass Spectrom; 2005 Aug; 16(8):1250-61. PubMed ID: 15979332
    [TBL] [Abstract][Full Text] [Related]  

  • 12. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
    Chi H; Chen H; He K; Wu L; Yang B; Sun RX; Liu J; Zeng WF; Song CQ; He SM; Dong MQ
    J Proteome Res; 2013 Feb; 12(2):615-25. PubMed ID: 23272783
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Implementation and application of a versatile clustering tool for tandem mass spectrometry data.
    Flikka K; Meukens J; Helsens K; Vandekerckhove J; Eidhammer I; Gevaert K; Martens L
    Proteomics; 2007 Sep; 7(18):3245-58. PubMed ID: 17708593
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to Increase Sensitivity and Accuracy in Peptide Identifications from Tandem Mass Spectra of Cofragmentation.
    Madar IH; Ko SI; Kim H; Mun DG; Kim S; Smith RD; Lee SW
    Anal Chem; 2017 Jan; 89(2):1244-1253. PubMed ID: 27966901
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
    Madsen JA; Xu H; Robinson MR; Horton AP; Shaw JB; Giles DK; Kaoud TS; Dalby KN; Trent MS; Brodbelt JS
    Mol Cell Proteomics; 2013 Sep; 12(9):2604-14. PubMed ID: 23695934
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The spectral networks paradigm in high throughput mass spectrometry.
    Guthals A; Watrous JD; Dorrestein PC; Bandeira N
    Mol Biosyst; 2012 Oct; 8(10):2535-44. PubMed ID: 22610447
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data.
    Fu Y; Xiu LY; Jia W; Ye D; Sun RX; Qian XH; He SM
    Mol Cell Proteomics; 2011 May; 10(5):M110.000455. PubMed ID: 21321130
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
    Kim S; Mischerikow N; Bandeira N; Navarro JD; Wich L; Mohammed S; Heck AJ; Pevzner PA
    Mol Cell Proteomics; 2010 Dec; 9(12):2840-52. PubMed ID: 20829449
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A dynamic noise level algorithm for spectral screening of peptide MS/MS spectra.
    Xu H; Freitas MA
    BMC Bioinformatics; 2010 Aug; 11():436. PubMed ID: 20731867
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 6.