335 related articles for article (PubMed ID: 23482648)
1. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.
Sheffield NC; Thurman RE; Song L; Safi A; Stamatoyannopoulos JA; Lenhard B; Crawford GE; Furey TS
Genome Res; 2013 May; 23(5):777-88. PubMed ID: 23482648
[TBL] [Abstract][Full Text] [Related]
2. Predicting cell-type-specific gene expression from regions of open chromatin.
Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
[TBL] [Abstract][Full Text] [Related]
3. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
4. Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals.
Chen A; Chen D; Chen Y
Gene; 2018 Aug; 667():83-94. PubMed ID: 29772251
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).
Crawford GE; Holt IE; Whittle J; Webb BD; Tai D; Davis S; Margulies EH; Chen Y; Bernat JA; Ginsburg D; Zhou D; Luo S; Vasicek TJ; Daly MJ; Wolfsberg TG; Collins FS
Genome Res; 2006 Jan; 16(1):123-31. PubMed ID: 16344561
[TBL] [Abstract][Full Text] [Related]
6. Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells.
Wang YM; Zhou P; Wang LY; Li ZH; Zhang YN; Zhang YX
PLoS One; 2012; 7(8):e42414. PubMed ID: 22900019
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Characterization of DNase I-Hypersensitive Sites and Cold Response Regulatory Landscapes in Grasses.
Han J; Wang P; Wang Q; Lin Q; Chen Z; Yu G; Miao C; Dao Y; Wu R; Schnable JC; Tang H; Wang K
Plant Cell; 2020 Aug; 32(8):2457-2473. PubMed ID: 32471863
[TBL] [Abstract][Full Text] [Related]
8. Genome-wide discovery of active regulatory elements and transcription factor footprints in
Ho MCW; Quintero-Cadena P; Sternberg PW
Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
[TBL] [Abstract][Full Text] [Related]
9. Use Chou's 5-steps rule to identify DNase I hypersensitive sites via dinucleotide property matrix and extreme gradient boosting.
Zhang S; Xue T
Mol Genet Genomics; 2020 Nov; 295(6):1431-1442. PubMed ID: 32685987
[TBL] [Abstract][Full Text] [Related]
10. Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.
Xi H; Shulha HP; Lin JM; Vales TR; Fu Y; Bodine DM; McKay RD; Chenoweth JG; Tesar PJ; Furey TS; Ren B; Weng Z; Crawford GE
PLoS Genet; 2007 Aug; 3(8):e136. PubMed ID: 17708682
[TBL] [Abstract][Full Text] [Related]
11. Local sequence features that influence AP-1
Chaudhari HG; Cohen BA
Genome Res; 2018 Feb; 28(2):171-181. PubMed ID: 29305491
[TBL] [Abstract][Full Text] [Related]
12. Index and biological spectrum of human DNase I hypersensitive sites.
Meuleman W; Muratov A; Rynes E; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Teodosiadis A; Reynolds A; Haugen E; Nelson J; Johnson A; Frerker M; Buckley M; Sandstrom R; Vierstra J; Kaul R; Stamatoyannopoulos J
Nature; 2020 Aug; 584(7820):244-251. PubMed ID: 32728217
[TBL] [Abstract][Full Text] [Related]
13. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Song L; Zhang Z; Grasfeder LL; Boyle AP; Giresi PG; Lee BK; Sheffield NC; Gräf S; Huss M; Keefe D; Liu Z; London D; McDaniell RM; Shibata Y; Showers KA; Simon JM; Vales T; Wang T; Winter D; Zhang Z; Clarke ND; Birney E; Iyer VR; Crawford GE; Lieb JD; Furey TS
Genome Res; 2011 Oct; 21(10):1757-67. PubMed ID: 21750106
[TBL] [Abstract][Full Text] [Related]
14. Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions.
Benner C; Konovalov S; Mackintosh C; Hutt KR; Stunnenberg R; Garcia-Bassets I
PLoS Genet; 2013 Nov; 9(11):e1003906. PubMed ID: 24244184
[TBL] [Abstract][Full Text] [Related]
15. Identification of a candidate regulatory region in the human CD8 gene complex by colocalization of DNase I hypersensitive sites and matrix attachment regions which bind SATB1 and GATA-3.
Kieffer LJ; Greally JM; Landres I; Nag S; Nakajima Y; Kohwi-Shigematsu T; Kavathas PB
J Immunol; 2002 Apr; 168(8):3915-22. PubMed ID: 11937547
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples.
Jin W; Tang Q; Wan M; Cui K; Zhang Y; Ren G; Ni B; Sklar J; Przytycka TM; Childs R; Levens D; Zhao K
Nature; 2015 Dec; 528(7580):142-6. PubMed ID: 26605532
[TBL] [Abstract][Full Text] [Related]
17. NicE-seq: high resolution open chromatin profiling.
Ponnaluri VKC; Zhang G; Estève PO; Spracklin G; Sian S; Xu SY; Benoukraf T; Pradhan S
Genome Biol; 2017 Jun; 18(1):122. PubMed ID: 28655330
[TBL] [Abstract][Full Text] [Related]
18. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.
Shibata Y; Sheffield NC; Fedrigo O; Babbitt CC; Wortham M; Tewari AK; London D; Song L; Lee BK; Iyer VR; Parker SC; Margulies EH; Wray GA; Furey TS; Crawford GE
PLoS Genet; 2012 Jun; 8(6):e1002789. PubMed ID: 22761590
[TBL] [Abstract][Full Text] [Related]
19. The functional consequences of variation in transcription factor binding.
Cusanovich DA; Pavlovic B; Pritchard JK; Gilad Y
PLoS Genet; 2014 Mar; 10(3):e1004226. PubMed ID: 24603674
[TBL] [Abstract][Full Text] [Related]
20. Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.
Shi B; Guo X; Wu T; Sheng S; Wang J; Skogerbø G; Zhu X; Chen R
BMC Genomics; 2009 Feb; 10():92. PubMed ID: 19243610
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
