These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 23486213)

  • 1. Protein structure alignment beyond spatial proximity.
    Wang S; Ma J; Peng J; Xu J
    Sci Rep; 2013; 3():1448. PubMed ID: 23486213
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
    Pandit SB; Skolnick J
    BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evolutionary rates at codon sites may be used to align sequences and infer protein domain function.
    Durand PM; Hazelhurst S; Coetzer TL
    BMC Bioinformatics; 2010 Mar; 11():151. PubMed ID: 20334658
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Iterative non-sequential protein structural alignment.
    Salem S; Zaki MJ; Bystroff C
    J Bioinform Comput Biol; 2009 Jun; 7(3):571-96. PubMed ID: 19507290
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ
    Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Non-sequential protein structure alignment by conformational space annealing and local refinement.
    Joung I; Kim JY; Joo K; Lee J
    PLoS One; 2019; 14(1):e0210177. PubMed ID: 30699145
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SAlign-a structure aware method for global PPI network alignment.
    Ayub U; Haider I; Naveed H
    BMC Bioinformatics; 2020 Nov; 21(1):500. PubMed ID: 33148180
    [TBL] [Abstract][Full Text] [Related]  

  • 10. pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP.
    Chen W; Yao C; Guo Y; Wang Y; Xue Z
    BMC Bioinformatics; 2020 Sep; 21(1):426. PubMed ID: 32993484
    [TBL] [Abstract][Full Text] [Related]  

  • 11. mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
    Dong R; Peng Z; Zhang Y; Yang J
    Bioinformatics; 2018 May; 34(10):1719-1725. PubMed ID: 29281009
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
    Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
    Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SAS-Pro: simultaneous residue assignment and structure superposition for protein structure alignment.
    Shah SB; Sahinidis NV
    PLoS One; 2012; 7(5):e37493. PubMed ID: 22662161
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
    Lin HN; Notredame C; Chang JM; Sung TY; Hsu WL
    PLoS One; 2011; 6(12):e27872. PubMed ID: 22163274
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Alignment of protein sequences by their profiles.
    Marti-Renom MA; Madhusudhan MS; Sali A
    Protein Sci; 2004 Apr; 13(4):1071-87. PubMed ID: 15044736
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Algorithms for optimal protein structure alignment.
    Poleksic A
    Bioinformatics; 2009 Nov; 25(21):2751-6. PubMed ID: 19734152
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Topology-independent and global protein structure alignment through an FFT-based algorithm.
    Wen Z; He J; Huang SY
    Bioinformatics; 2020 Jan; 36(2):478-486. PubMed ID: 31384919
    [TBL] [Abstract][Full Text] [Related]  

  • 18. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
    Teichert F; Minning J; Bastolla U; Porto M
    BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
    Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.