170 related articles for article (PubMed ID: 23514548)
1. Function prediction from networks of local evolutionary similarity in protein structure.
Erdin S; Venner E; Lisewski AM; Lichtarge O
BMC Bioinformatics; 2013; 14 Suppl 3(Suppl 3):S6. PubMed ID: 23514548
[TBL] [Abstract][Full Text] [Related]
2. Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.
Ward RM; Venner E; Daines B; Murray S; Erdin S; Kristensen DM; Lichtarge O
Bioinformatics; 2009 Jun; 25(11):1426-7. PubMed ID: 19307237
[TBL] [Abstract][Full Text] [Related]
3. Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.
Kristensen DM; Ward RM; Lisewski AM; Erdin S; Chen BY; Fofanov VY; Kimmel M; Kavraki LE; Lichtarge O
BMC Bioinformatics; 2008 Jan; 9():17. PubMed ID: 18190718
[TBL] [Abstract][Full Text] [Related]
4. Evolutionary trace annotation of protein function in the structural proteome.
Erdin S; Ward RM; Venner E; Lichtarge O
J Mol Biol; 2010 Mar; 396(5):1451-73. PubMed ID: 20036248
[TBL] [Abstract][Full Text] [Related]
5. Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity.
Kristensen DM; Chen BY; Fofanov VY; Ward RM; Lisewski AM; Kimmel M; Kavraki LE; Lichtarge O
Protein Sci; 2006 Jun; 15(6):1530-6. PubMed ID: 16672239
[TBL] [Abstract][Full Text] [Related]
6. De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features.
Ward RM; Erdin S; Tran TA; Kristensen DM; Lisewski AM; Lichtarge O
PLoS One; 2008 May; 3(5):e2136. PubMed ID: 18461181
[TBL] [Abstract][Full Text] [Related]
7. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
[TBL] [Abstract][Full Text] [Related]
8. ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape.
Bachman BJ; Venner E; Lua RC; Erdin S; Lichtarge O
Bioinformatics; 2012 Aug; 28(16):2186-8. PubMed ID: 22689386
[TBL] [Abstract][Full Text] [Related]
9. Ab initio and homology based prediction of protein domains by recursive neural networks.
Walsh I; Martin AJ; Mooney C; Rubagotti E; Vullo A; Pollastri G
BMC Bioinformatics; 2009 Jun; 10():195. PubMed ID: 19558651
[TBL] [Abstract][Full Text] [Related]
10. Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities.
Venner E; Lisewski AM; Erdin S; Ward RM; Amin SR; Lichtarge O
PLoS One; 2010 Dec; 5(12):e14286. PubMed ID: 21179190
[TBL] [Abstract][Full Text] [Related]
11. How to inherit statistically validated annotation within BAR+ protein clusters.
Piovesan D; Martelli PL; Fariselli P; Profiti G; Zauli A; Rossi I; Casadio R
BMC Bioinformatics; 2013; 14 Suppl 3(Suppl 3):S4. PubMed ID: 23514411
[TBL] [Abstract][Full Text] [Related]
12. Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families.
Torrance JW; Bartlett GJ; Porter CT; Thornton JM
J Mol Biol; 2005 Apr; 347(3):565-81. PubMed ID: 15755451
[TBL] [Abstract][Full Text] [Related]
13. COFACTOR: an accurate comparative algorithm for structure-based protein function annotation.
Roy A; Yang J; Zhang Y
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W471-7. PubMed ID: 22570420
[TBL] [Abstract][Full Text] [Related]
14. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
[TBL] [Abstract][Full Text] [Related]
15. Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features.
Yaseen A; Li Y
BMC Bioinformatics; 2014; 15 Suppl 8(Suppl 8):S3. PubMed ID: 25080939
[TBL] [Abstract][Full Text] [Related]
16. FLORA: a novel method to predict protein function from structure in diverse superfamilies.
Redfern OC; Dessailly BH; Dallman TJ; Sillitoe I; Orengo CA
PLoS Comput Biol; 2009 Aug; 5(8):e1000485. PubMed ID: 19714201
[TBL] [Abstract][Full Text] [Related]
17. Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17.
Zhang C; Wei X; Omenn GS; Zhang Y
J Proteome Res; 2018 Dec; 17(12):4186-4196. PubMed ID: 30265558
[TBL] [Abstract][Full Text] [Related]
18. Protein function prediction by massive integration of evolutionary analyses and multiple data sources.
Cozzetto D; Buchan DW; Bryson K; Jones DT
BMC Bioinformatics; 2013; 14 Suppl 3(Suppl 3):S1. PubMed ID: 23514099
[TBL] [Abstract][Full Text] [Related]
19. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
[TBL] [Abstract][Full Text] [Related]
20. Quantification of the impact of PSI:Biology according to the annotations of the determined structures.
DePietro PJ; Julfayev ES; McLaughlin WA
BMC Struct Biol; 2013 Oct; 13():24. PubMed ID: 24139526
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]