These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 23517345)

  • 21. Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator.
    Chang AT; Tran M; Nikonowicz EP
    Biochemistry; 2017 May; 56(21):2690-2700. PubMed ID: 28488852
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The dynamic structural basis of differential enhancement of conformational stability by 5'- and 3'-dangling ends in RNA.
    Liu JD; Zhao L; Xia T
    Biochemistry; 2008 Jun; 47(22):5962-75. PubMed ID: 18457418
    [TBL] [Abstract][Full Text] [Related]  

  • 23. How do hydrophobic nucleobases differ from natural DNA nucleobases? Comparison of structural features and duplex properties from QM calculations and MD simulations.
    Negi I; Kathuria P; Sharma P; Wetmore SD
    Phys Chem Chem Phys; 2017 Jun; 19(25):16365-16374. PubMed ID: 28657627
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.
    Réblová K; Fadrná E; Sarzynska J; Kulinski T; Kulhánek P; Ennifar E; Koca J; Sponer J
    Biophys J; 2007 Dec; 93(11):3932-49. PubMed ID: 17704156
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A combinatorial approach to the repertoire of RNA kissing motifs; towards multiplex detection by switching hairpin aptamers.
    Durand G; Dausse E; Goux E; Fiore E; Peyrin E; Ravelet C; Toulmé JJ
    Nucleic Acids Res; 2016 May; 44(9):4450-9. PubMed ID: 27067541
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Molecular modeling and dynamics studies of HIV-1 kissing loop structures.
    Pattabiraman N; Martinez HM; Shapiro BA
    J Biomol Struct Dyn; 2002 Dec; 20(3):397-412. PubMed ID: 12437378
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings.
    Cragnolini T; Laurin Y; Derreumaux P; Pasquali S
    J Chem Theory Comput; 2015 Jul; 11(7):3510-22. PubMed ID: 26575783
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Conserved unpaired adenine residues are important for ordered structures of 5S ribosomal RNA. An infrared study of the secondary and tertiary structure of Thermus thermophilus 5S rRNA.
    Böhm S; Venyaminov SYu ; Fabian H; Filimonov VV; Welfle H
    Eur J Biochem; 1985 Mar; 147(3):503-10. PubMed ID: 2579810
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs.
    Chen G; Kierzek R; Yildirim I; Krugh TR; Turner DH; Kennedy SD
    J Phys Chem B; 2007 Jun; 111(24):6718-27. PubMed ID: 17411085
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops.
    Chen G; Kennedy SD; Turner DH
    Biochemistry; 2009 Jun; 48(24):5738-52. PubMed ID: 19485416
    [TBL] [Abstract][Full Text] [Related]  

  • 31. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Kinetics of formation of hypoxanthine containing base pairs by HIV-RT: RNA template effects on the base substitution frequencies.
    Valentine MR; Termini J
    Nucleic Acids Res; 2001 Mar; 29(5):1191-9. PubMed ID: 11222769
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry.
    Yu E; Fabris D
    J Mol Biol; 2003 Jul; 330(2):211-23. PubMed ID: 12823962
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations.
    Mládek A; Sharma P; Mitra A; Bhattacharyya D; Sponer J; Sponer JE
    J Phys Chem B; 2009 Feb; 113(6):1743-55. PubMed ID: 19152254
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Understanding the effects of carbocyclic sugars constrained to north and south conformations on RNA nanodesign.
    Kim T; Barchi JJ; Marquez VE; Shapiro BA
    J Mol Graph Model; 2011 Feb; 29(5):624-34. PubMed ID: 21159533
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid.
    Sugimoto N; Kierzek R; Turner DH
    Biochemistry; 1987 Jul; 26(14):4554-8. PubMed ID: 2444250
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Adenine protonation in domain B of the hairpin ribozyme.
    Ravindranathan S; Butcher SE; Feigon J
    Biochemistry; 2000 Dec; 39(51):16026-32. PubMed ID: 11123930
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study.
    Barthel A; Zacharias M
    Biophys J; 2006 Apr; 90(7):2450-62. PubMed ID: 16399833
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Free energy analysis and mechanism of base pair stacking in nicked DNA.
    Häse F; Zacharias M
    Nucleic Acids Res; 2016 Sep; 44(15):7100-8. PubMed ID: 27407106
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Base-stacking disorder and excited-state dynamics in single-stranded adenine homo-oligonucleotides.
    Su C; Middleton CT; Kohler B
    J Phys Chem B; 2012 Aug; 116(34):10266-74. PubMed ID: 22853704
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.