These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
171 related articles for article (PubMed ID: 23523719)
1. Fast and accurate reference-free alignment of subtomograms. Chen Y; Pfeffer S; Hrabe T; Schuller JM; Förster F J Struct Biol; 2013 Jun; 182(3):235-45. PubMed ID: 23523719 [TBL] [Abstract][Full Text] [Related]
2. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching. Xu M; Beck M; Alber F J Struct Biol; 2012 May; 178(2):152-64. PubMed ID: 22420977 [TBL] [Abstract][Full Text] [Related]
3. PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis. Hrabe T; Chen Y; Pfeffer S; Cuellar LK; Mangold AV; Förster F J Struct Biol; 2012 May; 178(2):177-88. PubMed ID: 22193517 [TBL] [Abstract][Full Text] [Related]
4. Autofocused 3D classification of cryoelectron subtomograms. Chen Y; Pfeffer S; Fernández JJ; Sorzano CO; Förster F Structure; 2014 Oct; 22(10):1528-37. PubMed ID: 25242455 [TBL] [Abstract][Full Text] [Related]
5. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification. Zhao Y; Zeng X; Guo Q; Xu M Bioinformatics; 2018 Jul; 34(13):i227-i236. PubMed ID: 29949977 [TBL] [Abstract][Full Text] [Related]
6. Quantifying resolution limiting factors in subtomogram averaged cryo-electron tomography using simulations. Voortman LM; Vulović M; Maletta M; Voigt A; Franken EM; Simonetti A; Peters PJ; van Vliet LJ; Rieger B J Struct Biol; 2014 Aug; 187(2):103-111. PubMed ID: 24998892 [TBL] [Abstract][Full Text] [Related]
7. Optimal and fast rotational alignment of volumes with missing data in Fourier space. Shatsky M; Arbelaez P; Glaeser RM; Brenner SE J Struct Biol; 2013 Nov; 184(2):345-7. PubMed ID: 23994045 [TBL] [Abstract][Full Text] [Related]
8. Refinement procedure for the image alignment in high-resolution electron tomography. Houben L; Bar Sadan M Ultramicroscopy; 2011; 111(9-10):1512-20. PubMed ID: 21930024 [TBL] [Abstract][Full Text] [Related]
9. Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms. Xu M; Alber F Bioinformatics; 2013 Jul; 29(13):i274-82. PubMed ID: 23812994 [TBL] [Abstract][Full Text] [Related]
10. Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization. Lü Y; Zeng X; Zhao X; Li S; Li H; Gao X; Xu M BMC Bioinformatics; 2019 Aug; 20(1):443. PubMed ID: 31455212 [TBL] [Abstract][Full Text] [Related]
11. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography. Singla J; White KL; Stevens RC; Alber F J Struct Biol; 2021 Jun; 213(2):107727. PubMed ID: 33753204 [TBL] [Abstract][Full Text] [Related]
12. Classification of electron sub-tomograms with neural networks and its application to template-matching. Yu Z; Frangakis AS J Struct Biol; 2011 Jun; 174(3):494-504. PubMed ID: 21382496 [TBL] [Abstract][Full Text] [Related]
16. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis. Frazier Z; Xu M; Alber F Structure; 2017 Jun; 25(6):951-961.e2. PubMed ID: 28552576 [TBL] [Abstract][Full Text] [Related]
17. emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging. Himes BA; Zhang P Nat Methods; 2018 Nov; 15(11):955-961. PubMed ID: 30349041 [TBL] [Abstract][Full Text] [Related]
18. What shapes template-matching performance in cryogenic electron tomography in situ? Maurer VJ; Siggel M; Kosinski J Acta Crystallogr D Struct Biol; 2024 Jun; 80(Pt 6):410-420. PubMed ID: 38805246 [TBL] [Abstract][Full Text] [Related]
19. STOPGAP: an open-source package for template matching, subtomogram alignment and classification. Wan W; Khavnekar S; Wagner J Acta Crystallogr D Struct Biol; 2024 May; 80(Pt 5):336-349. PubMed ID: 38606666 [TBL] [Abstract][Full Text] [Related]
20. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms. Castaño-Díez D; Kudryashev M; Stahlberg H J Struct Biol; 2017 Feb; 197(2):135-144. PubMed ID: 27288866 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]