These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
271 related articles for article (PubMed ID: 23532071)
1. The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis. Van Landeghem S; De Bodt S; Drebert ZJ; Inzé D; Van de Peer Y Plant Cell; 2013 Mar; 25(3):794-807. PubMed ID: 23532071 [TBL] [Abstract][Full Text] [Related]
2. Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana. Xu F; Li G; Zhao C; Li Y; Li P; Cui J; Deng Y; Shi T BMC Genomics; 2010 Nov; 11 Suppl 2(Suppl 2):S2. PubMed ID: 21047383 [TBL] [Abstract][Full Text] [Related]
3. LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks. Piereck B; Oliveira-Lima M; Benko-Iseppon AM; Diehl S; Schneider R; Brasileiro-Vidal AC; Barbosa-Silva A BMC Bioinformatics; 2020 Aug; 21(1):365. PubMed ID: 32838742 [TBL] [Abstract][Full Text] [Related]
4. CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations. De Bodt S; Hollunder J; Nelissen H; Meulemeester N; Inzé D New Phytol; 2012 Aug; 195(3):707-720. PubMed ID: 22651224 [TBL] [Abstract][Full Text] [Related]
5. Large-scale event extraction from literature with multi-level gene normalization. Van Landeghem S; Björne J; Wei CH; Hakala K; Pyysalo S; Ananiadou S; Kao HY; Lu Z; Salakoski T; Van de Peer Y; Ginter F PLoS One; 2013; 8(4):e55814. PubMed ID: 23613707 [TBL] [Abstract][Full Text] [Related]
6. Building an efficient curation workflow for the Arabidopsis literature corpus. Li D; Berardini TZ; Muller RJ; Huala E Database (Oxford); 2012; 2012():bas047. PubMed ID: 23221298 [TBL] [Abstract][Full Text] [Related]
7. Survey of Natural Language Processing Techniques in Bioinformatics. Zeng Z; Shi H; Wu Y; Hong Z Comput Math Methods Med; 2015; 2015():674296. PubMed ID: 26525745 [TBL] [Abstract][Full Text] [Related]
8. Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists. Bajic VB; Veronika M; Veladandi PS; Meka A; Heng MW; Rajaraman K; Pan H; Swarup S Plant Physiol; 2005 Aug; 138(4):1914-25. PubMed ID: 16172098 [TBL] [Abstract][Full Text] [Related]
10. HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways. Subramani S; Kalpana R; Monickaraj PM; Natarajan J J Biomed Inform; 2015 Apr; 54():121-31. PubMed ID: 25659452 [TBL] [Abstract][Full Text] [Related]
11. A kaleidoscopic view of the Arabidopsis core cell cycle interactome. Van Leene J; Boruc J; De Jaeger G; Russinova E; De Veylder L Trends Plant Sci; 2011 Mar; 16(3):141-50. PubMed ID: 21233003 [TBL] [Abstract][Full Text] [Related]
12. Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics. Naika M; Shameer K; Sowdhamini R Mol Biosyst; 2013 Jul; 9(7):1888-908. PubMed ID: 23645342 [TBL] [Abstract][Full Text] [Related]
13. Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events. Wu C; Schwartz JM; Brabant G; Peng SL; Nenadic G BMC Syst Biol; 2015; 9 Suppl 6(Suppl 6):S5. PubMed ID: 26679379 [TBL] [Abstract][Full Text] [Related]
14. Text mining and visualisation of Protein-Protein Interactions. Tsai FS Int J Comput Biol Drug Des; 2011; 4(3):239-44. PubMed ID: 21778557 [TBL] [Abstract][Full Text] [Related]
15. ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery. Krishnakumar V; Contrino S; Cheng CY; Belyaeva I; Ferlanti ES; Miller JR; Vaughn MW; Micklem G; Town CD; Chan AP Plant Cell Physiol; 2017 Jan; 58(1):e4. PubMed ID: 28013278 [TBL] [Abstract][Full Text] [Related]
16. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Cui J; Li P; Li G; Xu F; Zhao C; Li Y; Yang Z; Wang G; Yu Q; Li Y; Shi T Nucleic Acids Res; 2008 Jan; 36(Database issue):D999-1008. PubMed ID: 17962307 [TBL] [Abstract][Full Text] [Related]
17. Enhancing data integration with text analysis to find proteins implicated in plant stress response. Hassani-Pak K; Legaie R; Canevet C; van den Berg HA; Moore JD; Rawlings CJ J Integr Bioinform; 2010 Mar; 7(3):. PubMed ID: 20375451 [TBL] [Abstract][Full Text] [Related]
18. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. De Bodt S; Proost S; Vandepoele K; Rouzé P; Van de Peer Y BMC Genomics; 2009 Jun; 10():288. PubMed ID: 19563678 [TBL] [Abstract][Full Text] [Related]
19. A Guide to Dictionary-Based Text Mining. Cook HV; Jensen LJ Methods Mol Biol; 2019; 1939():73-89. PubMed ID: 30848457 [TBL] [Abstract][Full Text] [Related]
20. PathBinder--text empirics and automatic extraction of biomolecular interactions. Zhang L; Berleant D; Ding J; Cao T; Syrkin Wurtele E BMC Bioinformatics; 2009 Oct; 10 Suppl 11(Suppl 11):S18. PubMed ID: 19811683 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]