BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 23555082)

  • 1. State-of-the-art fusion-finder algorithms sensitivity and specificity.
    Carrara M; Beccuti M; Lazzarato F; Cavallo F; Cordero F; Donatelli S; Calogero RA
    Biomed Res Int; 2013; 2013():340620. PubMed ID: 23555082
    [TBL] [Abstract][Full Text] [Related]  

  • 2. State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?
    Carrara M; Beccuti M; Cavallo F; Donatelli S; Lazzarato F; Cordero F; Calogero RA
    BMC Bioinformatics; 2013; 14 Suppl 7(Suppl 7):S2. PubMed ID: 23815381
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Chimera: a Bioconductor package for secondary analysis of fusion products.
    Beccuti M; Carrara M; Cordero F; Lazzarato F; Donatelli S; Nadalin F; Policriti A; Calogero RA
    Bioinformatics; 2014 Dec; 30(24):3556-7. PubMed ID: 25286921
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
    Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
    BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The "grep" command but not FusionMap, FusionFinder or ChimeraScan captures the CIC-DUX4 fusion gene from whole transcriptome sequencing data on a small round cell tumor with t(4;19)(q35;q13).
    Panagopoulos I; Gorunova L; Bjerkehagen B; Heim S
    PLoS One; 2014; 9(6):e99439. PubMed ID: 24950227
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
    Ge H; Liu K; Juan T; Fang F; Newman M; Hoeck W
    Bioinformatics; 2011 Jul; 27(14):1922-8. PubMed ID: 21593131
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A fast detection of fusion genes from paired-end RNA-seq data.
    Vu TN; Deng W; Trac QT; Calza S; Hwang W; Pawitan Y
    BMC Genomics; 2018 Nov; 19(1):786. PubMed ID: 30382840
    [TBL] [Abstract][Full Text] [Related]  

  • 8. InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.
    Okonechnikov K; Imai-Matsushima A; Paul L; Seitz A; Meyer TF; Garcia-Alcalde F
    PLoS One; 2016; 11(12):e0167417. PubMed ID: 27907167
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
    Liu C; Ma J; Chang CJ; Zhou X
    BMC Bioinformatics; 2013 Jun; 14():193. PubMed ID: 23768108
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.
    Abate F; Acquaviva A; Paciello G; Foti C; Ficarra E; Ferrarini A; Delledonne M; Iacobucci I; Soverini S; Martinelli G; Macii E
    Bioinformatics; 2012 Aug; 28(16):2114-21. PubMed ID: 22711792
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Statistical algorithms improve accuracy of gene fusion detection.
    Hsieh G; Bierman R; Szabo L; Lee AG; Freeman DE; Watson N; Sweet-Cordero EA; Salzman J
    Nucleic Acids Res; 2017 Jul; 45(13):e126. PubMed ID: 28541529
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.
    Liu S; Tsai WH; Ding Y; Chen R; Fang Z; Huo Z; Kim S; Ma T; Chang TY; Priedigkeit NM; Lee AV; Luo J; Wang HW; Chung IF; Tseng GC
    Nucleic Acids Res; 2016 Mar; 44(5):e47. PubMed ID: 26582927
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Discovery of clinically relevant fusions in pediatric cancer.
    LaHaye S; Fitch JR; Voytovich KJ; Herman AC; Kelly BJ; Lammi GE; Arbesfeld JA; Wijeratne S; Franklin SJ; Schieffer KM; Bir N; McGrath SD; Miller AR; Wetzel A; Miller KE; Bedrosian TA; Leraas K; Varga EA; Lee K; Gupta A; Setty B; Boué DR; Leonard JR; Finlay JL; Abdelbaki MS; Osorio DS; Koo SC; Koboldt DC; Wagner AH; Eisfeld AK; Mrózek K; Magrini V; Cottrell CE; Mardis ER; Wilson RK; White P
    BMC Genomics; 2021 Dec; 22(1):872. PubMed ID: 34863095
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FuSpot: a web-based tool for visual evaluation of fusion candidates.
    Killian JA; Topiwala TM; Pelletier AR; Frankhouser DE; Yan PS; Bundschuh R
    BMC Genomics; 2018 Feb; 19(1):139. PubMed ID: 29439649
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing.
    Singh S; Li H
    RNA Biol; 2021 Oct; 18(sup1):254-267. PubMed ID: 34142643
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.
    Li Y; Chien J; Smith DI; Ma J
    Bioinformatics; 2011 Jun; 27(12):1708-10. PubMed ID: 21546395
    [TBL] [Abstract][Full Text] [Related]  

  • 17. annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.
    Gaonkar KS; Marini F; Rathi KS; Jain P; Zhu Y; Chimicles NA; Brown MA; Naqvi AS; Zhang B; Storm PB; Maris JM; Raman P; Resnick AC; Strauch K; Taroni JN; Rokita JL
    BMC Bioinformatics; 2020 Dec; 21(1):577. PubMed ID: 33317447
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data.
    Kumar S; Vo AD; Qin F; Li H
    Sci Rep; 2016 Feb; 6():21597. PubMed ID: 26862001
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.
    Paciello G; Ficarra E
    BMC Bioinformatics; 2017 Jan; 18(1):58. PubMed ID: 28114882
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads.
    Wu J; Zhang W; Huang S; He Z; Cheng Y; Wang J; Lam TW; Peng Z; Yiu SM
    Bioinformatics; 2013 Dec; 29(23):2971-8. PubMed ID: 24123671
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.