222 related articles for article (PubMed ID: 23555082)
1. State-of-the-art fusion-finder algorithms sensitivity and specificity.
Carrara M; Beccuti M; Lazzarato F; Cavallo F; Cordero F; Donatelli S; Calogero RA
Biomed Res Int; 2013; 2013():340620. PubMed ID: 23555082
[TBL] [Abstract][Full Text] [Related]
2. State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?
Carrara M; Beccuti M; Cavallo F; Donatelli S; Lazzarato F; Cordero F; Calogero RA
BMC Bioinformatics; 2013; 14 Suppl 7(Suppl 7):S2. PubMed ID: 23815381
[TBL] [Abstract][Full Text] [Related]
3. Chimera: a Bioconductor package for secondary analysis of fusion products.
Beccuti M; Carrara M; Cordero F; Lazzarato F; Donatelli S; Nadalin F; Policriti A; Calogero RA
Bioinformatics; 2014 Dec; 30(24):3556-7. PubMed ID: 25286921
[TBL] [Abstract][Full Text] [Related]
4. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
5. The "grep" command but not FusionMap, FusionFinder or ChimeraScan captures the CIC-DUX4 fusion gene from whole transcriptome sequencing data on a small round cell tumor with t(4;19)(q35;q13).
Panagopoulos I; Gorunova L; Bjerkehagen B; Heim S
PLoS One; 2014; 9(6):e99439. PubMed ID: 24950227
[TBL] [Abstract][Full Text] [Related]
6. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
Ge H; Liu K; Juan T; Fang F; Newman M; Hoeck W
Bioinformatics; 2011 Jul; 27(14):1922-8. PubMed ID: 21593131
[TBL] [Abstract][Full Text] [Related]
7. A fast detection of fusion genes from paired-end RNA-seq data.
Vu TN; Deng W; Trac QT; Calza S; Hwang W; Pawitan Y
BMC Genomics; 2018 Nov; 19(1):786. PubMed ID: 30382840
[TBL] [Abstract][Full Text] [Related]
8. InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.
Okonechnikov K; Imai-Matsushima A; Paul L; Seitz A; Meyer TF; Garcia-Alcalde F
PLoS One; 2016; 11(12):e0167417. PubMed ID: 27907167
[TBL] [Abstract][Full Text] [Related]
9. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
Liu C; Ma J; Chang CJ; Zhou X
BMC Bioinformatics; 2013 Jun; 14():193. PubMed ID: 23768108
[TBL] [Abstract][Full Text] [Related]
10. Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.
Abate F; Acquaviva A; Paciello G; Foti C; Ficarra E; Ferrarini A; Delledonne M; Iacobucci I; Soverini S; Martinelli G; Macii E
Bioinformatics; 2012 Aug; 28(16):2114-21. PubMed ID: 22711792
[TBL] [Abstract][Full Text] [Related]
11. Statistical algorithms improve accuracy of gene fusion detection.
Hsieh G; Bierman R; Szabo L; Lee AG; Freeman DE; Watson N; Sweet-Cordero EA; Salzman J
Nucleic Acids Res; 2017 Jul; 45(13):e126. PubMed ID: 28541529
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.
Liu S; Tsai WH; Ding Y; Chen R; Fang Z; Huo Z; Kim S; Ma T; Chang TY; Priedigkeit NM; Lee AV; Luo J; Wang HW; Chung IF; Tseng GC
Nucleic Acids Res; 2016 Mar; 44(5):e47. PubMed ID: 26582927
[TBL] [Abstract][Full Text] [Related]
13. Discovery of clinically relevant fusions in pediatric cancer.
LaHaye S; Fitch JR; Voytovich KJ; Herman AC; Kelly BJ; Lammi GE; Arbesfeld JA; Wijeratne S; Franklin SJ; Schieffer KM; Bir N; McGrath SD; Miller AR; Wetzel A; Miller KE; Bedrosian TA; Leraas K; Varga EA; Lee K; Gupta A; Setty B; Boué DR; Leonard JR; Finlay JL; Abdelbaki MS; Osorio DS; Koo SC; Koboldt DC; Wagner AH; Eisfeld AK; Mrózek K; Magrini V; Cottrell CE; Mardis ER; Wilson RK; White P
BMC Genomics; 2021 Dec; 22(1):872. PubMed ID: 34863095
[TBL] [Abstract][Full Text] [Related]
14. FuSpot: a web-based tool for visual evaluation of fusion candidates.
Killian JA; Topiwala TM; Pelletier AR; Frankhouser DE; Yan PS; Bundschuh R
BMC Genomics; 2018 Feb; 19(1):139. PubMed ID: 29439649
[TBL] [Abstract][Full Text] [Related]
15. Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing.
Singh S; Li H
RNA Biol; 2021 Oct; 18(sup1):254-267. PubMed ID: 34142643
[TBL] [Abstract][Full Text] [Related]
16. FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.
Li Y; Chien J; Smith DI; Ma J
Bioinformatics; 2011 Jun; 27(12):1708-10. PubMed ID: 21546395
[TBL] [Abstract][Full Text] [Related]
17. annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.
Gaonkar KS; Marini F; Rathi KS; Jain P; Zhu Y; Chimicles NA; Brown MA; Naqvi AS; Zhang B; Storm PB; Maris JM; Raman P; Resnick AC; Strauch K; Taroni JN; Rokita JL
BMC Bioinformatics; 2020 Dec; 21(1):577. PubMed ID: 33317447
[TBL] [Abstract][Full Text] [Related]
18. Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data.
Kumar S; Vo AD; Qin F; Li H
Sci Rep; 2016 Feb; 6():21597. PubMed ID: 26862001
[TBL] [Abstract][Full Text] [Related]
19. FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.
Paciello G; Ficarra E
BMC Bioinformatics; 2017 Jan; 18(1):58. PubMed ID: 28114882
[TBL] [Abstract][Full Text] [Related]
20. SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads.
Wu J; Zhang W; Huang S; He Z; Cheng Y; Wang J; Lam TW; Peng Z; Yiu SM
Bioinformatics; 2013 Dec; 29(23):2971-8. PubMed ID: 24123671
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]