BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

299 related articles for article (PubMed ID: 23557111)

  • 1. CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.
    Liu Y; Wirawan A; Schmidt B
    BMC Bioinformatics; 2013 Apr; 14():117. PubMed ID: 23557111
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions.
    Liu Y; Schmidt B; Maskell DL
    BMC Res Notes; 2010 Apr; 3():93. PubMed ID: 20370891
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.
    Liu Y; Maskell DL; Schmidt B
    BMC Res Notes; 2009 May; 2():73. PubMed ID: 19416548
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.
    Alachiotis N; Berger SA; Stamatakis A
    BMC Bioinformatics; 2012 Aug; 13():196. PubMed ID: 22876807
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ADEPT: a domain independent sequence alignment strategy for gpu architectures.
    Awan MG; Deslippe J; Buluc A; Selvitopi O; Hofmeyr S; Oliker L; Yelick K
    BMC Bioinformatics; 2020 Sep; 21(1):406. PubMed ID: 32933482
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment.
    Manavski SA; Valle G
    BMC Bioinformatics; 2008 Mar; 9 Suppl 2(Suppl 2):S10. PubMed ID: 18387198
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda.
    Wang S; Kim J; Jiang X; Brunner SF; Ohno-Machado L
    BMC Med Genomics; 2014; 7 Suppl 1(Suppl 1):S9. PubMed ID: 25077821
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System.
    Liu Y; Hong Y; Lin CY; Hung CL
    Int J Genomics; 2015; 2015():761063. PubMed ID: 26568953
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs.
    Huang LT; Wu CC; Lai LF; Li YJ
    Biomed Res Int; 2015; 2015():185179. PubMed ID: 26339591
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein alignment algorithms with an efficient backtracking routine on multiple GPUs.
    Blazewicz J; Frohmberg W; Kierzynka M; Pesch E; Wojciechowski P
    BMC Bioinformatics; 2011 May; 12():181. PubMed ID: 21599912
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.
    Rognes T
    BMC Bioinformatics; 2011 Jun; 12():221. PubMed ID: 21631914
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.
    Korpar M; Šošić M; Blažeka D; Šikić M
    PLoS One; 2015; 10(12):e0145857. PubMed ID: 26719890
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU.
    Jiang H; Ganesan N
    BMC Bioinformatics; 2016 Feb; 17():106. PubMed ID: 26920848
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware.
    Liu W; Schmidt B; Müller-Wittig W
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1678-84. PubMed ID: 21339531
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures: Highly Heterogeneous Smith-Waterman (HHeterSW).
    Gálvez S; Ferusic A; Esteban FJ; Hernández P; Caballero JA; Dorado G
    J Comput Biol; 2016 Oct; 23(10):801-9. PubMed ID: 27104636
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments.
    Daily J
    BMC Bioinformatics; 2016 Feb; 17():81. PubMed ID: 26864881
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Pairwise sequence alignment for very long sequences on GPUs.
    Li J; Ranka S; Sahni S
    Int J Bioinform Res Appl; 2014; 10(4-5):345-68. PubMed ID: 24989857
    [TBL] [Abstract][Full Text] [Related]  

  • 18. cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU.
    Zhang J; Wang H; Feng WC
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(4):830-843. PubMed ID: 26469393
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences.
    Okada D; Ino F; Hagihara K
    BMC Bioinformatics; 2015 Oct; 16():321. PubMed ID: 26445214
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Striped Smith-Waterman speeds database searches six times over other SIMD implementations.
    Farrar M
    Bioinformatics; 2007 Jan; 23(2):156-61. PubMed ID: 17110365
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.