These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

98 related articles for article (PubMed ID: 23557118)

  • 1. Designing DNA barcodes orthogonal in melting temperature by simulated annealing optimization.
    Elmas A; Jajamovich GH; Wang X; Samoilov MS
    Nucleic Acid Ther; 2013 Apr; 23(2):140-51. PubMed ID: 23557118
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Design of 240,000 orthogonal 25mer DNA barcode probes.
    Xu Q; Schlabach MR; Hannon GJ; Elledge SJ
    Proc Natl Acad Sci U S A; 2009 Feb; 106(7):2289-94. PubMed ID: 19171886
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Target concentration dependence of DNA melting temperature on oligonucleotide microarrays.
    Ozel AB; Srivannavit O; Rouillard JM; Gulari AE
    Biotechnol Prog; 2012; 28(2):556-66. PubMed ID: 22275183
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computer program for calculating the melting temperature of degenerate oligonucleotides used in PCR or hybridization.
    Chen H; Zhu G
    Biotechniques; 1997 Jun; 22(6):1158-60. PubMed ID: 9187769
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effect of thiazole orange doubly labeled thymidine on DNA duplex formation.
    Kimura Y; Hanami T; Tanaka Y; de Hoon MJ; Soma T; Harbers M; Lezhava A; Hayashizaki Y; Usui K
    Biochemistry; 2012 Aug; 51(31):6056-67. PubMed ID: 22765348
    [TBL] [Abstract][Full Text] [Related]  

  • 6. EvOligo: A Novel Software to Design and Group Libraries of Oligonucleotides Applicable for Nucleic Acid-Based Experiments.
    Milewski MC; Kamel K; Kurzynska-Kokorniak A; Chmielewski MK; Figlerowicz M
    J Comput Biol; 2017 Oct; 24(10):1014-1028. PubMed ID: 28294640
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Thermodynamic behavior of short oligonucleotides in microarray hybridizations can be described using Gibbs free energy in a nearest-neighbor model.
    Weckx S; Carlon E; DeVuyst L; Van Hummelen P
    J Phys Chem B; 2007 Dec; 111(48):13583-90. PubMed ID: 17994724
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A thermodynamic approach to designing structure-free combinatorial DNA word sets.
    Shortreed MR; Chang SB; Hong D; Phillips M; Campion B; Tulpan DC; Andronescu M; Condon A; Hoos HH; Smith LM
    Nucleic Acids Res; 2005; 33(15):4965-77. PubMed ID: 16284197
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Strategies for optimizing DNA hybridization on surfaces.
    Ravan H; Kashanian S; Sanadgol N; Badoei-Dalfard A; Karami Z
    Anal Biochem; 2014 Jan; 444():41-6. PubMed ID: 24121011
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Tabu Variable Neighborhood Search for Designing DNA Barcodes.
    Wang B; Zhang Q; Wei X
    IEEE Trans Nanobioscience; 2020 Jan; 19(1):127-131. PubMed ID: 31581087
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation.
    McTigue PM; Peterson RJ; Kahn JD
    Biochemistry; 2004 May; 43(18):5388-405. PubMed ID: 15122905
    [TBL] [Abstract][Full Text] [Related]  

  • 12. barCoder: a tool to generate unique, orthogonal genetic tags for qPCR detection.
    Bernhards CB; Lux MW; Katoski SE; Goralski TDP; Liem AT; Gibbons HS
    BMC Bioinformatics; 2021 Mar; 22(1):98. PubMed ID: 33648451
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A fractional programming approach to efficient DNA melting temperature calculation.
    Leber M; Kaderali L; Schönhuth A; Schrader R
    Bioinformatics; 2005 May; 21(10):2375-82. PubMed ID: 15769839
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.
    Binder H; Brücker J; Burden CJ
    J Phys Chem B; 2009 Mar; 113(9):2874-95. PubMed ID: 19708217
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discrimination between perfect and mismatched duplexes with oligonucleotide gel microchips: role of thermodynamic and kinetic effects during hybridization.
    Sorokin NV; Chechetkin VR; Livshits MA; Pan'kov SV; Donnikov MY; Gryadunov DA; Lapa SA; Zasedatelev AS
    J Biomol Struct Dyn; 2005 Jun; 22(6):725-34. PubMed ID: 15842177
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DNA probes: applications of the principles of nucleic acid hybridization.
    Wetmur JG
    Crit Rev Biochem Mol Biol; 1991; 26(3-4):227-59. PubMed ID: 1718662
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.
    Bhattacharyya J; Maiti S; Muhuri S; Nakano S; Miyoshi D; Sugimoto N
    Biochemistry; 2011 Aug; 50(34):7414-25. PubMed ID: 21774551
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Control of complexity constraints on combinatorial screening for preferred oligonucleotide hybridization sites on structured RNA.
    Bruice TW; Lima WF
    Biochemistry; 1997 Apr; 36(16):5004-19. PubMed ID: 9125523
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.
    Charbonnier Y; Gettler B; François P; Bento M; Renzoni A; Vaudaux P; Schlegel W; Schrenzel J
    BMC Genomics; 2005 Jun; 6():95. PubMed ID: 15963225
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A new general model for predicting melting thermodynamics of complementary and mismatched B-form duplexes containing locked nucleic acids: application to probe design for digital PCR detection of somatic mutations.
    Hughesman C; Fakhfakh K; Bidshahri R; Lund HL; Haynes C
    Biochemistry; 2015 Feb; 54(6):1338-52. PubMed ID: 25654628
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.