262 related articles for article (PubMed ID: 23560036)
1. t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.
Zhu L; You ZH; Huang DS; Wang B
PLoS One; 2013; 8(4):e58368. PubMed ID: 23560036
[TBL] [Abstract][Full Text] [Related]
2. Modeling interactome: scale-free or geometric?
Przulj N; Corneil DG; Jurisica I
Bioinformatics; 2004 Dec; 20(18):3508-15. PubMed ID: 15284103
[TBL] [Abstract][Full Text] [Related]
3. Learning the structure of protein-protein interaction networks.
Kuchaiev O; Przulj N
Pac Symp Biocomput; 2009; ():39-50. PubMed ID: 19209694
[TBL] [Abstract][Full Text] [Related]
4. Pairwise alignment of protein interaction networks.
Koyutürk M; Kim Y; Topkara U; Subramaniam S; Szpankowski W; Grama A
J Comput Biol; 2006 Mar; 13(2):182-99. PubMed ID: 16597234
[TBL] [Abstract][Full Text] [Related]
5. Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.
You ZH; Lei YK; Gui J; Huang DS; Zhou X
Bioinformatics; 2010 Nov; 26(21):2744-51. PubMed ID: 20817744
[TBL] [Abstract][Full Text] [Related]
6. Geometric evolutionary dynamics of protein interaction networks.
Przulj N; Kuchaiev O; Stevanović A; Hayes W
Pac Symp Biocomput; 2010; ():178-89. PubMed ID: 19908370
[TBL] [Abstract][Full Text] [Related]
7. Fitting a geometric graph to a protein-protein interaction network.
Higham DJ; Rasajski M; Przulj N
Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
[TBL] [Abstract][Full Text] [Related]
8. Next-generation large-scale binary protein interaction network for Drosophila melanogaster.
Tang HW; Spirohn K; Hu Y; Hao T; Kovács IA; Gao Y; Binari R; Yang-Zhou D; Wan KH; Bader JS; Balcha D; Bian W; Booth BW; Coté AG; de Rouck S; Desbuleux A; Goh KY; Kim DK; Knapp JJ; Lee WX; Lemmens I; Li C; Li M; Li R; Lim HJ; Liu Y; Luck K; Markey D; Pollis C; Rangarajan S; Rodiger J; Schlabach S; Shen Y; Sheykhkarimli D; TeeKing B; Roth FP; Tavernier J; Calderwood MA; Hill DE; Celniker SE; Vidal M; Perrimon N; Mohr SE
Nat Commun; 2023 Apr; 14(1):2162. PubMed ID: 37061542
[TBL] [Abstract][Full Text] [Related]
9. Predicting Protein-Protein Interactions via Random Ferns with Evolutionary Matrix Representation.
Li Y; Wang Z; You ZH; Li LP; Hu X
Comput Math Methods Med; 2022; 2022():7191684. PubMed ID: 35242211
[TBL] [Abstract][Full Text] [Related]
10. An integrative approach to modeling biological networks.
Memisevic V; Milenkovic T; Przulj N
J Integr Bioinform; 2010 Mar; 7(3):. PubMed ID: 20375453
[TBL] [Abstract][Full Text] [Related]
11. A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks.
Zhu L; Deng SP; Huang DS
IEEE Trans Nanobioscience; 2015 Jul; 14(5):528-34. PubMed ID: 25861086
[TBL] [Abstract][Full Text] [Related]
12. The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction.
Fang Y; Sun M; Dai G; Ramain K
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(1):76-85. PubMed ID: 26886733
[TBL] [Abstract][Full Text] [Related]
13. A linear-time algorithm for predicting functional annotations from PPI networks.
Wu Y; Lonardi S
J Bioinform Comput Biol; 2008 Dec; 6(6):1049-65. PubMed ID: 19090017
[TBL] [Abstract][Full Text] [Related]
14. Common Neighbors Extension of the Sticky Model for PPI Networks Evaluated by Global and Local Graphlet Similarity.
Maharaj S; Qian T; Ohiba Z; Hayes W
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):16-26. PubMed ID: 32809943
[TBL] [Abstract][Full Text] [Related]
15. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
Ou-Yang L; Yan H; Zhang XF
BMC Bioinformatics; 2017 Dec; 18(Suppl 13):463. PubMed ID: 29219066
[TBL] [Abstract][Full Text] [Related]
16. Global geometric affinity for revealing high fidelity protein interaction network.
Fang Y; Benjamin W; Sun M; Ramani K
PLoS One; 2011 May; 6(5):e19349. PubMed ID: 21559288
[TBL] [Abstract][Full Text] [Related]
17. Geometric de-noising of protein-protein interaction networks.
Kuchaiev O; Rasajski M; Higham DJ; Przulj N
PLoS Comput Biol; 2009 Aug; 5(8):e1000454. PubMed ID: 19662157
[TBL] [Abstract][Full Text] [Related]
18. LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.
Maskey S; Cho YR
BMC Genomics; 2019 Dec; 20(Suppl 9):964. PubMed ID: 31874635
[TBL] [Abstract][Full Text] [Related]
19. Systems biology approach reveals possible evolutionarily conserved moonlighting functions for enolase.
Paludo GP; Lorenzatto KR; Bonatto D; Ferreira HB
Comput Biol Chem; 2015 Oct; 58():1-8. PubMed ID: 25978602
[TBL] [Abstract][Full Text] [Related]
20. Global alignment of multiple protein interaction networks with application to functional orthology detection.
Singh R; Xu J; Berger B
Proc Natl Acad Sci U S A; 2008 Sep; 105(35):12763-8. PubMed ID: 18725631
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
