These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

270 related articles for article (PubMed ID: 23595227)

  • 1. Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types.
    Ernst J; Kellis M
    Genome Res; 2013 Jul; 23(7):1142-54. PubMed ID: 23595227
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
    Wang J; Zhuang J; Iyer S; Lin X; Whitfield TW; Greven MC; Pierce BG; Dong X; Kundaje A; Cheng Y; Rando OJ; Birney E; Myers RM; Noble WS; Snyder M; Weng Z
    Genome Res; 2012 Sep; 22(9):1798-812. PubMed ID: 22955990
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sequence and chromatin determinants of cell-type-specific transcription factor binding.
    Arvey A; Agius P; Noble WS; Leslie C
    Genome Res; 2012 Sep; 22(9):1723-34. PubMed ID: 22955984
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.
    Sethi I; Sinha S; Buck MJ
    BMC Genomics; 2014 Nov; 15(1):1042. PubMed ID: 25433490
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Maps of open chromatin highlight cell type-restricted patterns of regulatory sequence variation at hematological trait loci.
    Paul DS; Albers CA; Rendon A; Voss K; Stephens J; ; van der Harst P; Chambers JC; Soranzo N; Ouwehand WH; Deloukas P
    Genome Res; 2013 Jul; 23(7):1130-41. PubMed ID: 23570689
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Occupancy maps of 208 chromatin-associated proteins in one human cell type.
    Partridge EC; Chhetri SB; Prokop JW; Ramaker RC; Jansen CS; Goh ST; Mackiewicz M; Newberry KM; Brandsmeier LA; Meadows SK; Messer CL; Hardigan AA; Coppola CJ; Dean EC; Jiang S; Savic D; Mortazavi A; Wold BJ; Myers RM; Mendenhall EM
    Nature; 2020 Jul; 583(7818):720-728. PubMed ID: 32728244
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predicting cell-type-specific gene expression from regions of open chromatin.
    Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
    Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genome-wide map of regulatory interactions in the human genome.
    Heidari N; Phanstiel DH; He C; Grubert F; Jahanbani F; Kasowski M; Zhang MQ; Snyder MP
    Genome Res; 2014 Dec; 24(12):1905-17. PubMed ID: 25228660
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.
    Love MI; Huska MR; Jurk M; Schöpflin R; Starick SR; Schwahn K; Cooper SB; Yamamoto KR; Thomas-Chollier M; Vingron M; Meijsing SH
    Nucleic Acids Res; 2017 Feb; 45(4):1805-1819. PubMed ID: 27903902
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.
    Slattery M; Ma L; Spokony RF; Arthur RK; Kheradpour P; Kundaje A; Nègre N; Crofts A; Ptashkin R; Zieba J; Ostapenko A; Suchy S; Victorsen A; Jameel N; Grundstad AJ; Gao W; Moran JR; Rehm EJ; Grossman RL; Kellis M; White KP
    Genome Res; 2014 Jul; 24(7):1224-35. PubMed ID: 24985916
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay.
    Kheradpour P; Ernst J; Melnikov A; Rogov P; Wang L; Zhang X; Alston J; Mikkelsen TS; Kellis M
    Genome Res; 2013 May; 23(5):800-11. PubMed ID: 23512712
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes.
    Fan K; Moore JE; Zhang XO; Weng Z
    Nucleic Acids Res; 2021 Jun; 49(10):5705-5725. PubMed ID: 33978759
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A cis-regulatory map of the Drosophila genome.
    Nègre N; Brown CD; Ma L; Bristow CA; Miller SW; Wagner U; Kheradpour P; Eaton ML; Loriaux P; Sealfon R; Li Z; Ishii H; Spokony RF; Chen J; Hwang L; Cheng C; Auburn RP; Davis MB; Domanus M; Shah PK; Morrison CA; Zieba J; Suchy S; Senderowicz L; Victorsen A; Bild NA; Grundstad AJ; Hanley D; MacAlpine DM; Mannervik M; Venken K; Bellen H; White R; Gerstein M; Russell S; Grossman RL; Ren B; Posakony JW; Kellis M; White KP
    Nature; 2011 Mar; 471(7339):527-31. PubMed ID: 21430782
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 'Traffic light rules': Chromatin states direct miRNA-mediated network motifs running by integrating epigenome and regulatome.
    Zhao H; Zhang G; Pang L; Lan Y; Wang L; Yu F; Hu J; Li F; Zhao T; Xiao Y; Li X
    Biochim Biophys Acta; 2016 Jul; 1860(7):1475-88. PubMed ID: 27091612
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.
    He X; Chatterjee R; John S; Bravo H; Sathyanarayana BK; Biddie SC; FitzGerald PC; Stamatoyannopoulos JA; Hager GL; Vinson C
    BMC Genomics; 2013 Jun; 14():428. PubMed ID: 23805837
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MEDEA: analysis of transcription factor binding motifs in accessible chromatin.
    Mariani L; Weinand K; Gisselbrecht SS; Bulyk ML
    Genome Res; 2020 May; 30(5):736-748. PubMed ID: 32424069
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans.
    Sung MK; Jang J; Lee KS; Ghim CM; Choi JK
    Genome Biol; 2016 Jul; 17(1):164. PubMed ID: 27468897
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
    Chen CY; Morris Q; Mitchell JA
    BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.
    Kundaje A; Kyriazopoulou-Panagiotopoulou S; Libbrecht M; Smith CL; Raha D; Winters EE; Johnson SM; Snyder M; Batzoglou S; Sidow A
    Genome Res; 2012 Sep; 22(9):1735-47. PubMed ID: 22955985
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells.
    Wong KC; Li Y; Peng C
    Bioinformatics; 2016 Feb; 32(3):321-4. PubMed ID: 26411866
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.