These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 23599424)

  • 1. The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.
    Walzer M; Qi D; Mayer G; Uszkoreit J; Eisenacher M; Sachsenberg T; Gonzalez-Galarza FF; Fan J; Bessant C; Deutsch EW; Reisinger F; Vizcaíno JA; Medina-Aunon JA; Albar JP; Kohlbacher O; Jones AR
    Mol Cell Proteomics; 2013 Aug; 12(8):2332-40. PubMed ID: 23599424
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.
    Qi D; Zhang H; Fan J; Perkins S; Pisconti A; Simpson DM; Bessant C; Hubbard S; Jones AR
    Proteomics; 2015 Sep; 15(18):3152-62. PubMed ID: 26037908
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The jmzQuantML programming interface and validator for the mzQuantML data standard.
    Qi D; Krishna R; Jones AR
    Proteomics; 2014 Mar; 14(6):685-8. PubMed ID: 24453188
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Representation of selected-reaction monitoring data in the mzQuantML data standard.
    Qi D; Lawless C; Teleman J; Levander F; Holman SW; Hubbard S; Jones AR
    Proteomics; 2015 Aug; 15(15):2592-6. PubMed ID: 25884107
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The mzIdentML data standard for mass spectrometry-based proteomics results.
    Jones AR; Eisenacher M; Mayer G; Kohlbacher O; Siepen J; Hubbard SJ; Selley JN; Searle BC; Shofstahl J; Seymour SL; Julian R; Binz PA; Deutsch EW; Hermjakob H; Reisinger F; Griss J; Vizcaíno JA; Chambers M; Pizarro A; Creasy D
    Mol Cell Proteomics; 2012 Jul; 11(7):M111.014381. PubMed ID: 22375074
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Proteomics data exchange and storage: the need for common standards and public repositories.
    Jiménez RC; Vizcaíno JA
    Methods Mol Biol; 2013; 1007():317-33. PubMed ID: 23666733
    [TBL] [Abstract][Full Text] [Related]  

  • 7. qcML: an exchange format for quality control metrics from mass spectrometry experiments.
    Walzer M; Pernas LE; Nasso S; Bittremieux W; Nahnsen S; Kelchtermans P; Pichler P; van den Toorn HW; Staes A; Vandenbussche J; Mazanek M; Taus T; Scheltema RA; Kelstrup CD; Gatto L; van Breukelen B; Aiche S; Valkenborg D; Laukens K; Lilley KS; Olsen JV; Heck AJ; Mechtler K; Aebersold R; Gevaert K; Vizcaíno JA; Hermjakob H; Kohlbacher O; Martens L
    Mol Cell Proteomics; 2014 Aug; 13(8):1905-13. PubMed ID: 24760958
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany.
    Orchard S; Albar JP; Binz PA; Kettner C; Jones AR; Salek RM; Vizcaino JA; Deutsch EW; Hermjakob H
    Proteomics; 2014 Nov; 14(21-22):2363-8. PubMed ID: 25297050
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
    Griss J; Jones AR; Sachsenberg T; Walzer M; Gatto L; Hartler J; Thallinger GG; Salek RM; Steinbeck C; Neuhauser N; Cox J; Neumann S; Fan J; Reisinger F; Xu QW; Del Toro N; Pérez-Riverol Y; Ghali F; Bandeira N; Xenarios I; Kohlbacher O; Vizcaíno JA; Hermjakob H
    Mol Cell Proteomics; 2014 Oct; 13(10):2765-75. PubMed ID: 24980485
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.
    Martínez-Bartolomé S; Deutsch EW; Binz PA; Jones AR; Eisenacher M; Mayer G; Campos A; Canals F; Bech-Serra JJ; Carrascal M; Gay M; Paradela A; Navajas R; Marcilla M; Hernáez ML; Gutiérrez-Blázquez MD; Velarde LF; Aloria K; Beaskoetxea J; Medina-Aunon JA; Albar JP
    J Proteomics; 2013 Dec; 95():84-8. PubMed ID: 23500130
    [TBL] [Abstract][Full Text] [Related]  

  • 11. From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland.
    Orchard S; Albar JP; Deutsch EW; Eisenacher M; Binz PA; Martinez-Bartolomé S; Vizcaíno JA; Hermjakob H
    Proteomics; 2012 Feb; 12(3):351-5. PubMed ID: 22290802
    [TBL] [Abstract][Full Text] [Related]  

  • 12. mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms.
    Eisenacher M
    Methods Mol Biol; 2011; 696():161-77. PubMed ID: 21063947
    [TBL] [Abstract][Full Text] [Related]  

  • 13. jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.
    Griss J; Reisinger F; Hermjakob H; Vizcaíno JA
    Proteomics; 2012 Mar; 12(6):795-8. PubMed ID: 22539430
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A standardized framing for reporting protein identifications in mzIdentML 1.2.
    Seymour SL; Farrah T; Binz PA; Chalkley RJ; Cottrell JS; Searle BC; Tabb DL; Vizcaíno JA; Prieto G; Uszkoreit J; Eisenacher M; Martínez-Bartolomé S; Ghali F; Jones AR
    Proteomics; 2014 Nov; 14(21-22):2389-99. PubMed ID: 25092112
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mass spectrometer output file format mzML.
    Deutsch EW
    Methods Mol Biol; 2010; 604():319-31. PubMed ID: 20013381
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.
    Vizcaíno JA; Mayer G; Perkins S; Barsnes H; Vaudel M; Perez-Riverol Y; Ternent T; Uszkoreit J; Eisenacher M; Fischer L; Rappsilber J; Netz E; Walzer M; Kohlbacher O; Leitner A; Chalkley RJ; Ghali F; Martínez-Bartolomé S; Deutsch EW; Jones AR
    Mol Cell Proteomics; 2017 Jul; 16(7):1275-1285. PubMed ID: 28515314
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
    Mayer G; Montecchi-Palazzi L; Ovelleiro D; Jones AR; Binz PA; Deutsch EW; Chambers M; Kallhardt M; Levander F; Shofstahl J; Orchard S; Vizcaíno JA; Hermjakob H; Stephan C; Meyer HE; Eisenacher M;
    Database (Oxford); 2013; 2013():bat009. PubMed ID: 23482073
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Spectra, chromatograms, Metadata: mzML-the standard data format for mass spectrometer output.
    Turewicz M; Deutsch EW
    Methods Mol Biol; 2011; 696():179-203. PubMed ID: 21063948
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.
    Deutsch EW; Orchard S; Binz PA; Bittremieux W; Eisenacher M; Hermjakob H; Kawano S; Lam H; Mayer G; Menschaert G; Perez-Riverol Y; Salek RM; Tabb DL; Tenzer S; Vizcaíno JA; Walzer M; Jones AR
    J Proteome Res; 2017 Dec; 16(12):4288-4298. PubMed ID: 28849660
    [TBL] [Abstract][Full Text] [Related]  

  • 20. imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging.
    Römpp A; Schramm T; Hester A; Klinkert I; Both JP; Heeren RM; Stöckli M; Spengler B
    Methods Mol Biol; 2011; 696():205-24. PubMed ID: 21063949
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.