BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

321 related articles for article (PubMed ID: 23599922)

  • 1. LASAGNA-Search: an integrated web tool for transcription factor binding site search and visualization.
    Lee C; Huang CH
    Biotechniques; 2013 Mar; 54(3):141-53. PubMed ID: 23599922
    [TBL] [Abstract][Full Text] [Related]  

  • 2. LASAGNA: a novel algorithm for transcription factor binding site alignment.
    Lee C; Huang CH
    BMC Bioinformatics; 2013 Mar; 14():108. PubMed ID: 23522376
    [TBL] [Abstract][Full Text] [Related]  

  • 3. LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser.
    Lee C; Huang CH
    Bioinformatics; 2014 Jul; 30(13):1923-5. PubMed ID: 24578403
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
    Oliver P; Peralta-Gil M; Tabche ML; Merino E
    BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
    [TBL] [Abstract][Full Text] [Related]  

  • 5. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces.
    Sebastian A; Contreras-Moreira B
    Bioinformatics; 2014 Jan; 30(2):258-65. PubMed ID: 24234003
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD; Kohane IS; Riva A
    BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.
    Jenjaroenpun P; Kuznetsov VA
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S9. PubMed ID: 19958507
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment.
    Worsley Hunt R; Mathelier A; Del Peso L; Wasserman WW
    BMC Genomics; 2014 Jun; 15(1):472. PubMed ID: 24927817
    [TBL] [Abstract][Full Text] [Related]  

  • 9. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
    [TBL] [Abstract][Full Text] [Related]  

  • 10. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
    BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transcription Factor Information System (TFIS): A Tool for Detection of Transcription Factor Binding Sites.
    Narad P; Kumar A; Chakraborty A; Patni P; Sengupta A; Wadhwa G; Upadhyaya KC
    Interdiscip Sci; 2017 Sep; 9(3):378-391. PubMed ID: 27052996
    [TBL] [Abstract][Full Text] [Related]  

  • 12. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
    Ha N; Polychronidou M; Lohmann I
    PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MEME-ChIP: motif analysis of large DNA datasets.
    Machanick P; Bailey TL
    Bioinformatics; 2011 Jun; 27(12):1696-7. PubMed ID: 21486936
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles.
    Xuan Lin QX; Sian S; An O; Thieffry D; Jha S; Benoukraf T
    Nucleic Acids Res; 2019 Jan; 47(D1):D145-D154. PubMed ID: 30380113
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
    Acevedo-Luna N; Mariño-Ramírez L; Halbert A; Hansen U; Landsman D; Spouge JL
    BMC Bioinformatics; 2016 Nov; 17(1):479. PubMed ID: 27871221
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A suite of web-based programs to search for transcriptional regulatory motifs.
    Liu Y; Wei L; Batzoglou S; Brutlag DL; Liu JS; Liu XS
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W204-7. PubMed ID: 15215381
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting Transcription Factor Binding Sites and Their Cognate Transcription Factors Using Gene Expression Data.
    Yu CP; Li WH
    Methods Mol Biol; 2017; 1629():271-282. PubMed ID: 28623591
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants.
    Chow CN; Zheng HQ; Wu NY; Chien CH; Huang HD; Lee TY; Chiang-Hsieh YF; Hou PF; Yang TY; Chang WC
    Nucleic Acids Res; 2016 Jan; 44(D1):D1154-60. PubMed ID: 26476450
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The next generation of transcription factor binding site prediction.
    Mathelier A; Wasserman WW
    PLoS Comput Biol; 2013; 9(9):e1003214. PubMed ID: 24039567
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Motif enrichment tool.
    Blatti C; Sinha S
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W20-5. PubMed ID: 24860165
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.