These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

285 related articles for article (PubMed ID: 23600819)

  • 1. RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design.
    Garcia-Martin JA; Clote P; Dotu I
    J Bioinform Comput Biol; 2013 Apr; 11(2):1350001. PubMed ID: 23600819
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNAiFold: a web server for RNA inverse folding and molecular design.
    Garcia-Martin JA; Clote P; Dotu I
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W465-70. PubMed ID: 23700314
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.
    Garcia-Martin JA; Dotu I; Clote P
    Nucleic Acids Res; 2015 Jul; 43(W1):W513-21. PubMed ID: 26019176
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complete RNA inverse folding: computational design of functional hammerhead ribozymes.
    Dotu I; Garcia-Martin JA; Slinger BL; Mechery V; Meyer MM; Clote P
    Nucleic Acids Res; 2014 Oct; 42(18):11752-62. PubMed ID: 25209235
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNAiFold2T: Constraint Programming design of thermo-IRES switches.
    Garcia-Martin JA; Dotu I; Fernandez-Chamorro J; Lozano G; Ramajo J; Martinez-Salas E; Clote P
    Bioinformatics; 2016 Jun; 32(12):i360-i368. PubMed ID: 27307638
    [TBL] [Abstract][Full Text] [Related]  

  • 6. incaRNAfbinv: a web server for the fragment-based design of RNA sequences.
    Drory Retwitzer M; Reinharz V; Ponty Y; Waldispühl J; Barash D
    Nucleic Acids Res; 2016 Jul; 44(W1):W308-14. PubMed ID: 27185893
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
    Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
    BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evolutionary solution for the RNA design problem.
    Esmaili-Taheri A; Ganjtabesh M; Mohammad-Noori M
    Bioinformatics; 2014 May; 30(9):1250-8. PubMed ID: 24407223
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Frnakenstein: multiple target inverse RNA folding.
    Lyngsø RB; Anderson JW; Sizikova E; Badugu A; Hyland T; Hein J
    BMC Bioinformatics; 2012 Oct; 13():260. PubMed ID: 23043260
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Design of RNAs: comparing programs for inverse RNA folding.
    Churkin A; Retwitzer MD; Reinharz V; Ponty Y; Waldispühl J; Barash D
    Brief Bioinform; 2018 Mar; 19(2):350-358. PubMed ID: 28049135
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Network Properties of the Ensemble of RNA Structures.
    Clote P; Bayegan A
    PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA design using simulated SHAPE data.
    Lotfi M; Zare-Mirakabad F; Montaseri S
    Genes Genet Syst; 2018 May; 92(6):257-265. PubMed ID: 28757510
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ERD: a fast and reliable tool for RNA design including constraints.
    Esmaili-Taheri A; Ganjtabesh M
    BMC Bioinformatics; 2015 Jan; 16():20. PubMed ID: 25626878
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Toward Increasing the Credibility of RNA Design.
    Antczak M; Szachniuk M
    Methods Mol Biol; 2025; 2847():137-151. PubMed ID: 39312141
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discretized torsional dynamics and the folding of an RNA chain.
    Fernández A; Salthú R; Cendra H
    Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics; 1999 Aug; 60(2 Pt B):2105-19. PubMed ID: 11970003
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computing folding pathways between RNA secondary structures.
    Dotu I; Lorenz WA; Van Hentenryck P; Clote P
    Nucleic Acids Res; 2010 Mar; 38(5):1711-22. PubMed ID: 20044352
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Simulated Annealing for RNA Design with SIMARD.
    Tsang HH
    Methods Mol Biol; 2025; 2847():95-108. PubMed ID: 39312138
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNAfbinv: an interactive Java application for fragment-based design of RNA sequences.
    Weinbrand L; Avihoo A; Barash D
    Bioinformatics; 2013 Nov; 29(22):2938-40. PubMed ID: 23975763
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Recent advances in RNA folding.
    Fallmann J; Will S; Engelhardt J; Grüning B; Backofen R; Stadler PF
    J Biotechnol; 2017 Nov; 261():97-104. PubMed ID: 28690134
    [TBL] [Abstract][Full Text] [Related]  

  • 20. INFO-RNA--a fast approach to inverse RNA folding.
    Busch A; Backofen R
    Bioinformatics; 2006 Aug; 22(15):1823-31. PubMed ID: 16709587
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.