These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 23601859)

  • 21. Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center.
    Wattam AR; Brettin T; Davis JJ; Gerdes S; Kenyon R; Machi D; Mao C; Olson R; Overbeek R; Pusch GD; Shukla MP; Stevens R; Vonstein V; Warren A; Xia F; Yoo H
    Methods Mol Biol; 2018; 1704():79-101. PubMed ID: 29277864
    [TBL] [Abstract][Full Text] [Related]  

  • 22. ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes.
    Varani AM; Siguier P; Gourbeyre E; Charneau V; Chandler M
    Genome Biol; 2011; 12(3):R30. PubMed ID: 21443786
    [TBL] [Abstract][Full Text] [Related]  

  • 23. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
    Luo Y; Fu C; Zhang DY; Lin K
    BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.
    Tanizawa Y; Fujisawa T; Arita M; Nakamura Y
    Methods Mol Biol; 2019; 1962():215-226. PubMed ID: 31020563
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
    Médigue C; Calteau A; Cruveiller S; Gachet M; Gautreau G; Josso A; Lajus A; Langlois J; Pereira H; Planel R; Roche D; Rollin J; Rouy Z; Vallenet D
    Brief Bioinform; 2019 Jul; 20(4):1071-1084. PubMed ID: 28968784
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.
    Aziz RK; Devoid S; Disz T; Edwards RA; Henry CS; Olsen GJ; Olson R; Overbeek R; Parrello B; Pusch GD; Stevens RL; Vonstein V; Xia F
    PLoS One; 2012; 7(10):e48053. PubMed ID: 23110173
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MGcV: the microbial genomic context viewer for comparative genome analysis.
    Overmars L; Kerkhoven R; Siezen RJ; Francke C
    BMC Genomics; 2013 Apr; 14():209. PubMed ID: 23547764
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Bioverse: Functional, structural and contextual annotation of proteins and proteomes.
    McDermott J; Samudrala R
    Nucleic Acids Res; 2003 Jul; 31(13):3736-7. PubMed ID: 12824406
    [TBL] [Abstract][Full Text] [Related]  

  • 29. FastAnnotator--an efficient transcript annotation web tool.
    Chen TW; Gan RC; Wu TH; Huang PJ; Lee CY; Chen YY; Chen CC; Tang P
    BMC Genomics; 2012; 13 Suppl 7(Suppl 7):S9. PubMed ID: 23281853
    [TBL] [Abstract][Full Text] [Related]  

  • 30. PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.
    D'Ascenzo MD; Collmer A; Martin GB
    Nucleic Acids Res; 2004; 32(10):3124-35. PubMed ID: 15184545
    [TBL] [Abstract][Full Text] [Related]  

  • 31. AGeS: a software system for microbial genome sequence annotation.
    Kumar K; Desai V; Cheng L; Khitrov M; Grover D; Satya RV; Yu C; Zavaljevski N; Reifman J
    PLoS One; 2011 Mar; 6(3):e17469. PubMed ID: 21408217
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ReNoteWeb - Web platform for the improvement of assembly result and annotation of prokaryotic genomes.
    da Silva Moia G; Sérgio Cruz Gaia A; de Oliveira MS; Dos Santosa VC; Thyeska Castro Alves J; de Sá PHCG; de Oliveira Veras AA
    Gene; 2022 Nov; 844():146819. PubMed ID: 36029977
    [TBL] [Abstract][Full Text] [Related]  

  • 33. QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.
    Dhapola P; Chowdhury S
    Nucleic Acids Res; 2016 Jul; 44(W1):W277-83. PubMed ID: 27185890
    [TBL] [Abstract][Full Text] [Related]  

  • 34. proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors.
    Bai J; Wang J; Xue F; Li J; Bu L; Hu J; Xu G; Bao Q; Zhao G; Ding X; Yan J; Wu J
    Bioinformatics; 2010 Oct; 26(19):2493-5. PubMed ID: 20663847
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Prokaryotic Genome Annotation.
    Kimbrel JA; Jeffrey BM; Ward CS
    Methods Mol Biol; 2022; 2349():193-214. PubMed ID: 34718997
    [TBL] [Abstract][Full Text] [Related]  

  • 36. VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data.
    Peterson ES; McCue LA; Schrimpe-Rutledge AC; Jensen JL; Walker H; Kobold MA; Webb SR; Payne SH; Ansong C; Adkins JN; Cannon WR; Webb-Robertson BJ
    BMC Genomics; 2012 Apr; 13():131. PubMed ID: 22480257
    [TBL] [Abstract][Full Text] [Related]  

  • 37. pLannotate: engineered plasmid annotation.
    McGuffie MJ; Barrick JE
    Nucleic Acids Res; 2021 Jul; 49(W1):W516-W522. PubMed ID: 34019636
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The Medicago truncatula gene expression atlas web server.
    He J; Benedito VA; Wang M; Murray JD; Zhao PX; Tang Y; Udvardi MK
    BMC Bioinformatics; 2009 Dec; 10():441. PubMed ID: 20028527
    [TBL] [Abstract][Full Text] [Related]  

  • 39. PhaGAA: an integrated web server platform for phage genome annotation and analysis.
    Wu J; Liu Q; Li M; Xu J; Wang C; Zhang J; Xiao M; Bin Y; Xia J
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36882183
    [TBL] [Abstract][Full Text] [Related]  

  • 40. PADLOC: a web server for the identification of antiviral defence systems in microbial genomes.
    Payne LJ; Meaden S; Mestre MR; Palmer C; Toro N; Fineran PC; Jackson SA
    Nucleic Acids Res; 2022 Jul; 50(W1):W541-W550. PubMed ID: 35639517
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.