BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 23609546)

  • 1. LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sites.
    Xie ZR; Liu CK; Hsiao FC; Yao A; Hwang MJ
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W292-6. PubMed ID: 23609546
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.
    Xie ZR; Hwang MJ
    Bioinformatics; 2012 Jun; 28(12):1579-85. PubMed ID: 22495747
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.
    Konc J; Miller BT; Štular T; Lešnik S; Woodcock HL; Brooks BR; Janežič D
    J Chem Inf Model; 2015 Nov; 55(11):2308-14. PubMed ID: 26509288
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A web server for analysis, comparison and prediction of protein ligand binding sites.
    Singh H; Srivastava HK; Raghava GP
    Biol Direct; 2016 Mar; 11(1):14. PubMed ID: 27016210
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GalaxySite: ligand-binding-site prediction by using molecular docking.
    Heo L; Shin WH; Lee MS; Seok C
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W210-4. PubMed ID: 24753427
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
    Konc J; Janežič D
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W215-20. PubMed ID: 24861616
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
    Tan KP; Varadarajan R; Madhusudhan MS
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W242-8. PubMed ID: 21576233
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The FunFOLD2 server for the prediction of protein-ligand interactions.
    Roche DB; Buenavista MT; McGuffin LJ
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W303-7. PubMed ID: 23761453
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
    Roche DB; Tetchner SJ; McGuffin LJ
    BMC Bioinformatics; 2011 May; 12():160. PubMed ID: 21575183
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PatchSearch: a web server for off-target protein identification.
    Rey J; Rasolohery I; Tufféry P; Guyon F; Moroy G
    Nucleic Acids Res; 2019 Jul; 47(W1):W365-W372. PubMed ID: 31131411
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm.
    Chang DT; Oyang YJ; Lin JH
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W233-8. PubMed ID: 15991337
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.
    Xu Y; Wang S; Hu Q; Gao S; Ma X; Zhang W; Shen Y; Chen F; Lai L; Pei J
    Nucleic Acids Res; 2018 Jul; 46(W1):W374-W379. PubMed ID: 29750256
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AMMOS2: a web server for protein-ligand-water complexes refinement via molecular mechanics.
    Labbé CM; Pencheva T; Jereva D; Desvillechabrol D; Becot J; Villoutreix BO; Pajeva I; Miteva MA
    Nucleic Acids Res; 2017 Jul; 45(W1):W350-W355. PubMed ID: 28486703
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DR_bind: a web server for predicting DNA-binding residues from the protein structure based on electrostatics, evolution and geometry.
    Chen YC; Wright JD; Lim C
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W249-56. PubMed ID: 22661576
    [TBL] [Abstract][Full Text] [Related]  

  • 15. COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.
    Zhang C; Freddolino PL; Zhang Y
    Nucleic Acids Res; 2017 Jul; 45(W1):W291-W299. PubMed ID: 28472402
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
    Vangone A; Schaarschmidt J; Koukos P; Geng C; Citro N; Trellet ME; Xue LC; Bonvin AMJJ
    Bioinformatics; 2019 May; 35(9):1585-1587. PubMed ID: 31051038
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PockDrug-Server: a new web server for predicting pocket druggability on holo and apo proteins.
    Hussein HA; Borrel A; Geneix C; Petitjean M; Regad L; Camproux AC
    Nucleic Acids Res; 2015 Jul; 43(W1):W436-42. PubMed ID: 25956651
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cross-docking benchmark for automated pose and ranking prediction of ligand binding.
    Wierbowski SD; Wingert BM; Zheng J; Camacho CJ
    Protein Sci; 2020 Jan; 29(1):298-305. PubMed ID: 31721338
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes.
    Kasahara K; Kinoshita K
    BMC Bioinformatics; 2014 Jan; 15():12. PubMed ID: 24423161
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PrankWeb: a web server for ligand binding site prediction and visualization.
    Jendele L; Krivak R; Skoda P; Novotny M; Hoksza D
    Nucleic Acids Res; 2019 Jul; 47(W1):W345-W349. PubMed ID: 31114880
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.