BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

330 related articles for article (PubMed ID: 23616006)

  • 1. Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
    Pollier J; Rombauts S; Goossens A
    Methods Mol Biol; 2013; 1011():305-15. PubMed ID: 23616006
    [TBL] [Abstract][Full Text] [Related]  

  • 2. cDNA-AFLP-based transcript profiling for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
    Colling J; Pollier J; Makunga NP; Goossens A
    Methods Mol Biol; 2013; 1011():287-303. PubMed ID: 23616005
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Analysis of RNA-Seq Data Using TopHat and Cufflinks.
    Ghosh S; Chan CK
    Methods Mol Biol; 2016; 1374():339-61. PubMed ID: 26519415
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Strategies for transcriptome analysis in nonmodel plants.
    Ward JA; Ponnala L; Weber CA
    Am J Bot; 2012 Feb; 99(2):267-76. PubMed ID: 22301897
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
    Mangul S; Caciula A; Glebova O; Mandoiu I; Zelikovsky A
    In Silico Biol; 2011-2012; 11(5-6):251-61. PubMed ID: 23202426
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
    Strickler SR; Bombarely A; Mueller LA
    Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA-Seq for transcriptome analysis in non-model plants.
    Garg R; Jain M
    Methods Mol Biol; 2013; 1069():43-58. PubMed ID: 23996307
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data.
    Van Moerkercke A; Fabris M; Pollier J; Baart GJ; Rombauts S; Hasnain G; Rischer H; Memelink J; Oksman-Caldentey KM; Goossens A
    Plant Cell Physiol; 2013 May; 54(5):673-85. PubMed ID: 23493402
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology.
    Zhang B; Xie D; Jin Z
    J Integr Plant Biol; 2012 Feb; 54(2):73-86. PubMed ID: 22221297
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative transcriptome analysis using RNA-seq.
    Külahoglu C; Bräutigam A
    Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Next-generation sequencing applied to flower development: RNA-seq.
    He J; Jiao Y
    Methods Mol Biol; 2014; 1110():401-11. PubMed ID: 24395272
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.
    Hao DC; Yang L; Xiao PG; Liu M
    Physiol Plant; 2012 Dec; 146(4):388-403. PubMed ID: 22708792
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA-Seq analysis of the wild barley (H. spontaneum) leaf transcriptome under salt stress.
    Bahieldin A; Atef A; Sabir JS; Gadalla NO; Edris S; Alzohairy AM; Radhwan NA; Baeshen MN; Ramadan AM; Eissa HF; Hassan SM; Baeshen NA; Abuzinadah O; Al-Kordy MA; El-Domyati FM; Jansen RK
    C R Biol; 2015 May; 338(5):285-97. PubMed ID: 25882349
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TopHat: discovering splice junctions with RNA-Seq.
    Trapnell C; Pachter L; Salzberg SL
    Bioinformatics; 2009 May; 25(9):1105-11. PubMed ID: 19289445
    [TBL] [Abstract][Full Text] [Related]  

  • 16. High-throughput RNA-seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids.
    Ng DW; Shi X; Nah G; Chen ZJ
    Methods Mol Biol; 2014; 1112():33-48. PubMed ID: 24478006
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis.
    Chow KS; Ghazali AK; Hoh CC; Mohd-Zainuddin Z
    BMC Res Notes; 2014 Feb; 7():69. PubMed ID: 24484543
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species.
    Ilut DC; Coate JE; Luciano AK; Owens TG; May GD; Farmer A; Doyle JJ
    Am J Bot; 2012 Feb; 99(2):383-96. PubMed ID: 22301896
    [TBL] [Abstract][Full Text] [Related]  

  • 19. How to analyze gene expression using RNA-sequencing data.
    Ramsköld D; Kavak E; Sandberg R
    Methods Mol Biol; 2012; 802():259-74. PubMed ID: 22130886
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-Seq read alignments with PALMapper.
    Jean G; Kahles A; Sreedharan VT; De Bona F; Rätsch G
    Curr Protoc Bioinformatics; 2010 Dec; Chapter 11():Unit 11.6. PubMed ID: 21154708
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.