422 related articles for article (PubMed ID: 23623682)
1. The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation.
Ross W; Vrentas CE; Sanchez-Vazquez P; Gaal T; Gourse RL
Mol Cell; 2013 May; 50(3):420-9. PubMed ID: 23623682
[TBL] [Abstract][Full Text] [Related]
2. The mechanism of E. coli RNA polymerase regulation by ppGpp is suggested by the structure of their complex.
Zuo Y; Wang Y; Steitz TA
Mol Cell; 2013 May; 50(3):430-6. PubMed ID: 23623685
[TBL] [Abstract][Full Text] [Related]
3. The role of ω-subunit of Escherichia coli RNA polymerase in stress response.
Bhardwaj N; Syal K; Chatterji D
Genes Cells; 2018 May; 23(5):357-369. PubMed ID: 29542212
[TBL] [Abstract][Full Text] [Related]
4. ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response.
Ross W; Sanchez-Vazquez P; Chen AY; Lee JH; Burgos HL; Gourse RL
Mol Cell; 2016 Jun; 62(6):811-823. PubMed ID: 27237053
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide effects on
Sanchez-Vazquez P; Dewey CN; Kitten N; Ross W; Gourse RL
Proc Natl Acad Sci U S A; 2019 Apr; 116(17):8310-8319. PubMed ID: 30971496
[TBL] [Abstract][Full Text] [Related]
6. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP.
Barker MM; Gaal T; Gourse RL
J Mol Biol; 2001 Jan; 305(4):689-702. PubMed ID: 11162085
[TBL] [Abstract][Full Text] [Related]
7. Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation.
Vrentas CE; Gaal T; Berkmen MB; Rutherford ST; Haugen SP; Vassylyev DG; Ross W; Gourse RL
J Mol Biol; 2008 Mar; 377(2):551-64. PubMed ID: 18272182
[TBL] [Abstract][Full Text] [Related]
8. Structure-function comparisons of (p)ppApp vs (p)ppGpp for Escherichia coli RNA polymerase binding sites and for rrnB P1 promoter regulatory responses in vitro.
Bruhn-Olszewska B; Molodtsov V; Sobala M; Dylewski M; Murakami KS; Cashel M; Potrykus K
Biochim Biophys Acta Gene Regul Mech; 2018 Aug; 1861(8):731-742. PubMed ID: 30012465
[TBL] [Abstract][Full Text] [Related]
9. TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp.
Gopalkrishnan S; Ross W; Chen AY; Gourse RL
Proc Natl Acad Sci U S A; 2017 Jul; 114(28):E5539-E5548. PubMed ID: 28652326
[TBL] [Abstract][Full Text] [Related]
10. Universal functions of the σ finger in alternative σ factors during transcription initiation by bacterial RNA polymerase.
Oguienko A; Petushkov I; Pupov D; Esyunina D; Kulbachinskiy A
RNA Biol; 2021 Nov; 18(11):2028-2037. PubMed ID: 33573428
[TBL] [Abstract][Full Text] [Related]
11. ppGpp couples transcription to DNA repair in E. coli.
Kamarthapu V; Epshtein V; Benjamin B; Proshkin S; Mironov A; Cashel M; Nudler E
Science; 2016 May; 352(6288):993-6. PubMed ID: 27199428
[TBL] [Abstract][Full Text] [Related]
12. Promoter-specific control of E. coli RNA polymerase by ppGpp and a general transcription factor.
Roberts JW
Genes Dev; 2009 Jan; 23(2):143-6. PubMed ID: 19171778
[TBL] [Abstract][Full Text] [Related]
13. Control of transcription elongation and DNA repair by alarmone ppGpp.
Weaver JW; Proshkin S; Duan W; Epshtein V; Gowder M; Bharati BK; Afanaseva E; Mironov A; Serganov A; Nudler E
Nat Struct Mol Biol; 2023 May; 30(5):600-607. PubMed ID: 36997761
[TBL] [Abstract][Full Text] [Related]
14. The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.
Bernardo LM; Johansson LU; Solera D; Skärfstad E; Shingler V
Mol Microbiol; 2006 May; 60(3):749-64. PubMed ID: 16629675
[TBL] [Abstract][Full Text] [Related]
15. Differential binding of ppGpp and pppGpp to E. coli RNA polymerase: photo-labeling and mass spectral studies.
Syal K; Chatterji D
Genes Cells; 2015 Dec; 20(12):1006-16. PubMed ID: 26606426
[TBL] [Abstract][Full Text] [Related]
16. Binding of the transcription effector ppGpp to Escherichia coli RNA polymerase is allosteric, modular, and occurs near the N terminus of the beta'-subunit.
Toulokhonov II; Shulgina I; Hernandez VJ
J Biol Chem; 2001 Jan; 276(2):1220-5. PubMed ID: 11035017
[TBL] [Abstract][Full Text] [Related]
17. New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase-promoter complex.
Doniselli N; Rodriguez-Aliaga P; Amidani D; Bardales JA; Bustamante C; Guerra DG; Rivetti C
Nucleic Acids Res; 2015 May; 43(10):5249-62. PubMed ID: 25916853
[TBL] [Abstract][Full Text] [Related]
18. Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex.
Mekler V; Minakhin L; Borukhov S; Mustaev A; Severinov K
J Mol Biol; 2014 Dec; 426(24):3973-3984. PubMed ID: 25311862
[TBL] [Abstract][Full Text] [Related]
19. Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.
Vrentas CE; Gaal T; Ross W; Ebright RH; Gourse RL
Genes Dev; 2005 Oct; 19(19):2378-87. PubMed ID: 16204187
[TBL] [Abstract][Full Text] [Related]
20. Changes in conserved region 3 of Escherichia coli sigma 70 mediate ppGpp-dependent functions in vivo.
Hernandez VJ; Cashel M
J Mol Biol; 1995 Oct; 252(5):536-49. PubMed ID: 7563072
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]