BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

248 related articles for article (PubMed ID: 23649127)

  • 1. Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates.
    Do H; Wong SQ; Li J; Dobrovic A
    Clin Chem; 2013 Sep; 59(9):1376-83. PubMed ID: 23649127
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The efficacy of uracil DNA glycosylase pretreatment in amplicon-based massively parallel sequencing with DNA extracted from archived formalin-fixed paraffin-embedded esophageal cancer tissues.
    Serizawa M; Yokota T; Hosokawa A; Kusafuka K; Sugiyama T; Tsubosa Y; Yasui H; Nakajima T; Koh Y
    Cancer Genet; 2015 Sep; 208(9):415-27. PubMed ID: 26194062
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil- DNA glycosylase.
    Do H; Dobrovic A
    Oncotarget; 2012 May; 3(5):546-58. PubMed ID: 22643842
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing.
    Wong SQ; Li J; Tan AY; Vedururu R; Pang JM; Do H; Ellul J; Doig K; Bell A; MacArthur GA; Fox SB; Thomas DM; Fellowes A; Parisot JP; Dobrovic A;
    BMC Med Genomics; 2014 May; 7():23. PubMed ID: 24885028
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence artifacts in DNA from formalin-fixed tissues: causes and strategies for minimization.
    Do H; Dobrovic A
    Clin Chem; 2015 Jan; 61(1):64-71. PubMed ID: 25421801
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reducing Artifactual
    Do H; Molania R; Mitchell PL; Vaiskunaite R; Murdoch JD; Dobrovic A
    Clin Chem; 2017 Sep; 63(9):1506-1514. PubMed ID: 28720682
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Deamination Effects in Formalin-Fixed, Paraffin-Embedded Tissue Samples in the Era of Precision Medicine.
    Kim S; Park C; Ji Y; Kim DG; Bae H; van Vrancken M; Kim DH; Kim KM
    J Mol Diagn; 2017 Jan; 19(1):137-146. PubMed ID: 27840062
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Why Formalin-fixed, Paraffin-embedded Biospecimens Must Be Used in Genomic Medicine: An Evidence-based Review and Conclusion.
    Mathieson W; Thomas GA
    J Histochem Cytochem; 2020 Aug; 68(8):543-552. PubMed ID: 32697619
    [TBL] [Abstract][Full Text] [Related]  

  • 9. HaloPlex Targeted Resequencing for Mutation Detection in Clinical Formalin-Fixed, Paraffin-Embedded Tumor Samples.
    Moens LN; Falk-Sörqvist E; Ljungström V; Mattsson J; Sundström M; La Fleur L; Mathot L; Micke P; Nilsson M; Botling J
    J Mol Diagn; 2015 Nov; 17(6):729-39. PubMed ID: 26354930
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.
    Schweiger MR; Kerick M; Timmermann B; Albrecht MW; Borodina T; Parkhomchuk D; Zatloukal K; Lehrach H
    PLoS One; 2009; 4(5):e5548. PubMed ID: 19440246
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of pre-analytical FFPE sample preparation methods and their impact on massively parallel sequencing in routine diagnostics.
    Heydt C; Fassunke J; Künstlinger H; Ihle MA; König K; Heukamp LC; Schildhaus HU; Odenthal M; Büttner R; Merkelbach-Bruse S
    PLoS One; 2014; 9(8):e104566. PubMed ID: 25105902
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PIK3CA mutation is a favorable prognostic factor in esophageal cancer: molecular profile by next-generation sequencing using surgically resected formalin-fixed, paraffin-embedded tissue.
    Yokota T; Serizawa M; Hosokawa A; Kusafuka K; Mori K; Sugiyama T; Tsubosa Y; Koh Y
    BMC Cancer; 2018 Aug; 18(1):826. PubMed ID: 30115035
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.
    Prentice LM; Miller RR; Knaggs J; Mazloomian A; Aguirre Hernandez R; Franchini P; Parsa K; Tessier-Cloutier B; Lapuk A; Huntsman D; Schaeffer DF; Sheffield BS
    PLoS One; 2018; 13(4):e0196434. PubMed ID: 29698444
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Non-reproducible sequence artifacts in FFPE tissue: an experience report.
    Ofner R; Ritter C; Ugurel S; Cerroni L; Stiller M; Bogenrieder T; Solca F; Schrama D; Becker JC
    J Cancer Res Clin Oncol; 2017 Jul; 143(7):1199-1207. PubMed ID: 28314930
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DEEPOMICS FFPE, a deep neural network model, identifies DNA sequencing artifacts from formalin fixed paraffin embedded tissue with high accuracy.
    Heo DH; Kim I; Seo H; Kim SG; Kim M; Park J; Park H; Kang S; Kim J; Paik S; Hong SE
    Sci Rep; 2024 Jan; 14(1):2559. PubMed ID: 38297116
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Towards standardization of next-generation sequencing of FFPE samples for clinical oncology: intrinsic obstacles and possible solutions.
    Ivanov M; Laktionov K; Breder V; Chernenko P; Novikova E; Telysheva E; Musienko S; Baranova A; Mileyko V
    J Transl Med; 2017 Jan; 15(1):22. PubMed ID: 28137276
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate Detection of Multiple Tumor Mutations in Formalin-Fixed Paraffin-Embedded Tissues by Coupling Sequence Artifacts Elimination and Mutation Enrichment With MeltArray.
    Lan Y; Xu B; Xi Y; Luo Y; Guo X; Huang Z; Luo D; Zhu A; He P; Li C; Huang Q; Li Q
    Lab Invest; 2024 Feb; 104(2):100300. PubMed ID: 38042496
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.
    Munchel S; Hoang Y; Zhao Y; Cottrell J; Klotzle B; Godwin AK; Koestler D; Beyerlein P; Fan JB; Bibikova M; Chien J
    Oncotarget; 2015 Sep; 6(28):25943-61. PubMed ID: 26305677
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Technical in-depth comparison of two massive parallel DNA-sequencing methods for formalin-fixed paraffin-embedded tissue from victims of sudden cardiac death.
    Adolfsson E; Qvick A; Gréen H; Kling D; Gunnarsson C; Jonasson J; Gréen A
    Forensic Sci Int Genet; 2021 Jul; 53():102522. PubMed ID: 33945952
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Preparation of Duplex Sequencing Libraries for Archival Paraffin-Embedded Tissue Samples Using Single-Strand-Specific Nuclease P1.
    Mitiushkina NV; Yanus GA; Kuligina ES; Laidus TA; Romanko AA; Kholmatov MM; Ivantsov AO; Aleksakhina SN; Imyanitov EN
    Int J Mol Sci; 2022 Apr; 23(9):. PubMed ID: 35562977
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.