These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
188 related articles for article (PubMed ID: 23650509)
1. Construction of ontology augmented networks for protein complex prediction. Zhang Y; Lin H; Yang Z; Wang J PLoS One; 2013; 8(5):e62077. PubMed ID: 23650509 [TBL] [Abstract][Full Text] [Related]
2. Protein complex prediction in large ontology attributed protein-protein interaction networks. Zhang Y; Lin H; Yang Z; Wang J; Li Y; Xu B IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(3):729-41. PubMed ID: 24091405 [TBL] [Abstract][Full Text] [Related]
3. Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. Zhang W; Xu J; Li Y; Zou X IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(1):109-116. PubMed ID: 28650821 [TBL] [Abstract][Full Text] [Related]
4. A supervised protein complex prediction method with network representation learning and gene ontology knowledge. Wang X; Zhang Y; Zhou P; Liu X BMC Bioinformatics; 2022 Jul; 23(1):300. PubMed ID: 35879648 [TBL] [Abstract][Full Text] [Related]
5. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering. Theofilatos K; Pavlopoulou N; Papasavvas C; Likothanassis S; Dimitrakopoulos C; Georgopoulos E; Moschopoulos C; Mavroudi S Artif Intell Med; 2015 Mar; 63(3):181-9. PubMed ID: 25765008 [TBL] [Abstract][Full Text] [Related]
6. Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction. Stojanova D; Ceci M; Malerba D; Dzeroski S BMC Bioinformatics; 2013 Sep; 14():285. PubMed ID: 24070402 [TBL] [Abstract][Full Text] [Related]
7. Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities. Fernando PC; Mabee PM; Zeng E BMC Bioinformatics; 2020 Oct; 21(1):442. PubMed ID: 33028186 [TBL] [Abstract][Full Text] [Related]
8. Integrating network topology, gene expression data and GO annotation information for protein complex prediction. Zhang W; Xu J; Li Y; Zou X J Bioinform Comput Biol; 2019 Feb; 17(1):1950001. PubMed ID: 30803297 [TBL] [Abstract][Full Text] [Related]
9. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks. Xu B; Guan J IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(4):616-27. PubMed ID: 26356332 [TBL] [Abstract][Full Text] [Related]
10. A Type-2 fuzzy data fusion approach for building reliable weighted protein interaction networks with application in protein complex detection. Mehranfar A; Ghadiri N; Kouhsar M; Golshani A Comput Biol Med; 2017 Sep; 88():18-31. PubMed ID: 28672176 [TBL] [Abstract][Full Text] [Related]
11. A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity. Lei C; Ruan J Bioinformatics; 2013 Feb; 29(3):355-64. PubMed ID: 23235927 [TBL] [Abstract][Full Text] [Related]
12. Identification of Protein Complexes Based on Core-Attachment Structure and Combination of Centrality Measures and Biological Properties in PPI Weighted Networks. Elahi A; Babamir SM Protein J; 2020 Dec; 39(6):681-702. PubMed ID: 33040223 [TBL] [Abstract][Full Text] [Related]
13. Impact of low-confidence interactions on computational identification of protein complexes. Paul M; Anand A J Bioinform Comput Biol; 2020 Aug; 18(4):2050025. PubMed ID: 32757809 [TBL] [Abstract][Full Text] [Related]
14. Systematic Functional Annotation and Visualization of Biological Networks. Baryshnikova A Cell Syst; 2016 Jun; 2(6):412-21. PubMed ID: 27237738 [TBL] [Abstract][Full Text] [Related]
15. Integrating experimental and literature protein-protein interaction data for protein complex prediction. Zhang Y; Lin H; Yang Z; Wang J BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S4. PubMed ID: 25708571 [TBL] [Abstract][Full Text] [Related]
16. Survey: Enhancing protein complex prediction in PPI networks with GO similarity weighting. Price T; Peña FI; Cho YR Interdiscip Sci; 2013 Sep; 5(3):196-210. PubMed ID: 24307411 [TBL] [Abstract][Full Text] [Related]
17. Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity. Leuthaeuser JB; Knutson ST; Kumar K; Babbitt PC; Fetrow JS Protein Sci; 2015 Sep; 24(9):1423-39. PubMed ID: 26073648 [TBL] [Abstract][Full Text] [Related]
18. Alignment of PPI Networks Using Semantic Similarity for Conserved Protein Complex Prediction. Shui Y; Cho YR IEEE Trans Nanobioscience; 2016 Jun; 15(4):380-389. PubMed ID: 28113907 [TBL] [Abstract][Full Text] [Related]
19. A unified representation of multiprotein complex data for modeling interaction networks. Ding C; He X; Meraz RF; Holbrook SR Proteins; 2004 Oct; 57(1):99-108. PubMed ID: 15326596 [TBL] [Abstract][Full Text] [Related]
20. Integration of molecular network data reconstructs Gene Ontology. Gligorijević V; Janjić V; Pržulj N Bioinformatics; 2014 Sep; 30(17):i594-600. PubMed ID: 25161252 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]