These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
209 related articles for article (PubMed ID: 23665771)
21. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244 [TBL] [Abstract][Full Text] [Related]
22. LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads. El-Metwally S; Zakaria M; Hamza T Bioinformatics; 2016 Nov; 32(21):3215-3223. PubMed ID: 27412092 [TBL] [Abstract][Full Text] [Related]
23. Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly. Huptas C; Scherer S; Wenning M BMC Res Notes; 2016 May; 9():269. PubMed ID: 27176120 [TBL] [Abstract][Full Text] [Related]
24. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing. Chen Z; Erickson DL; Meng J Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875 [TBL] [Abstract][Full Text] [Related]
25. Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach. Bayat A; Deshpande NP; Wilkins MR; Parameswaran S IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):334-338. PubMed ID: 30307874 [TBL] [Abstract][Full Text] [Related]
28. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Bankevich A; Nurk S; Antipov D; Gurevich AA; Dvorkin M; Kulikov AS; Lesin VM; Nikolenko SI; Pham S; Prjibelski AD; Pyshkin AV; Sirotkin AV; Vyahhi N; Tesler G; Alekseyev MA; Pevzner PA J Comput Biol; 2012 May; 19(5):455-77. PubMed ID: 22506599 [TBL] [Abstract][Full Text] [Related]
29. A comparative evaluation of genome assembly reconciliation tools. Alhakami H; Mirebrahim H; Lonardi S Genome Biol; 2017 May; 18(1):93. PubMed ID: 28521789 [TBL] [Abstract][Full Text] [Related]
30. Improving de novo Assembly Based on Read Classification. Liao X; Li M; Luo J; Zou Y; Wu FX; Pan Y; Luo F; Wang J IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):177-188. PubMed ID: 30059317 [TBL] [Abstract][Full Text] [Related]
31. Benchmarking of long-read assemblers for prokaryote whole genome sequencing. Wick RR; Holt KE F1000Res; 2019; 8():2138. PubMed ID: 31984131 [No Abstract] [Full Text] [Related]
32. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. Wick RR; Judd LM; Gorrie CL; Holt KE PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827 [TBL] [Abstract][Full Text] [Related]
33. Short read fragment assembly of bacterial genomes. Chaisson MJ; Pevzner PA Genome Res; 2008 Feb; 18(2):324-30. PubMed ID: 18083777 [TBL] [Abstract][Full Text] [Related]
34. Accuracy of de novo assembly of DNA sequences from double-digest libraries varies substantially among software. LaCava MEF; Aikens EO; Megna LC; Randolph G; Hubbard C; Buerkle CA Mol Ecol Resour; 2020 Mar; 20(2):360-370. PubMed ID: 31665547 [TBL] [Abstract][Full Text] [Related]
35. Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data. Finotello F; Lavezzo E; Fontana P; Peruzzo D; Albiero A; Barzon L; Falda M; Di Camillo B; Toppo S Brief Bioinform; 2012 May; 13(3):269-80. PubMed ID: 22021898 [TBL] [Abstract][Full Text] [Related]
36. An integrated pipeline for de novo assembly of microbial genomes. Tritt A; Eisen JA; Facciotti MT; Darling AE PLoS One; 2012; 7(9):e42304. PubMed ID: 23028432 [TBL] [Abstract][Full Text] [Related]
37. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Koren S; Harhay GP; Smith TP; Bono JL; Harhay DM; Mcvey SD; Radune D; Bergman NH; Phillippy AM Genome Biol; 2013; 14(9):R101. PubMed ID: 24034426 [TBL] [Abstract][Full Text] [Related]