155 related articles for article (PubMed ID: 23677611)
1. WebScipio: Reconstructing alternative splice variants of eukaryotic proteins.
Hatje K; Hammesfahr B; Kollmar M
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W504-9. PubMed ID: 23677611
[TBL] [Abstract][Full Text] [Related]
2. Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.
Pillmann H; Hatje K; Odronitz F; Hammesfahr B; Kollmar M
BMC Bioinformatics; 2011 Jun; 12():270. PubMed ID: 21718515
[TBL] [Abstract][Full Text] [Related]
3. Predicting Genes in Closely Related Species with Scipio and WebScipio.
Kollmar M
Methods Mol Biol; 2019; 1962():193-206. PubMed ID: 31020561
[TBL] [Abstract][Full Text] [Related]
4. Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.
Hatje K; Keller O; Hammesfahr B; Pillmann H; Waack S; Kollmar M
BMC Res Notes; 2011 Jul; 4():265. PubMed ID: 21798037
[TBL] [Abstract][Full Text] [Related]
5. WebScipio: an online tool for the determination of gene structures using protein sequences.
Odronitz F; Pillmann H; Keller O; Waack S; Kollmar M
BMC Genomics; 2008 Sep; 9():422. PubMed ID: 18801164
[TBL] [Abstract][Full Text] [Related]
6. Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes.
Hatje K; Kollmar M
BMC Genomics; 2014 Feb; 15():115. PubMed ID: 24507667
[TBL] [Abstract][Full Text] [Related]
7. EASED: Extended Alternatively Spliced EST Database.
Pospisil H; Herrmann A; Bortfeldt RH; Reich JG
Nucleic Acids Res; 2004 Jan; 32(Database issue):D70-4. PubMed ID: 14681361
[TBL] [Abstract][Full Text] [Related]
8. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Krüger J; Sczyrba A; Kurtz S; Giegerich R
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W301-4. PubMed ID: 15215398
[TBL] [Abstract][Full Text] [Related]
9. GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.
Hammesfahr B; Odronitz F; Mühlhausen S; Waack S; Kollmar M
BMC Bioinformatics; 2013 Mar; 14():77. PubMed ID: 23496949
[TBL] [Abstract][Full Text] [Related]
10. WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.
Liang C; Liu L; Ji G
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W77-83. PubMed ID: 19465381
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii.
Labadorf A; Link A; Rogers MF; Thomas J; Reddy AS; Ben-Hur A
BMC Genomics; 2010 Feb; 11():114. PubMed ID: 20163725
[TBL] [Abstract][Full Text] [Related]
12. MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences.
Lee BT; Tan TW; Ranganathan S
Nucleic Acids Res; 2003 Jul; 31(13):3533-6. PubMed ID: 12824360
[TBL] [Abstract][Full Text] [Related]
13. ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Castrignanò T; Rizzi R; Talamo IG; De Meo PD; Anselmo A; Bonizzoni P; Pesole G
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W440-3. PubMed ID: 16845044
[TBL] [Abstract][Full Text] [Related]
14. WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes.
Hoff KJ; Stanke M
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W123-8. PubMed ID: 23700307
[TBL] [Abstract][Full Text] [Related]
15. ASD: the Alternative Splicing Database.
Thanaraj TA; Stamm S; Clark F; Riethoven JJ; Le Texier V; Muilu J
Nucleic Acids Res; 2004 Jan; 32(Database issue):D64-9. PubMed ID: 14681360
[TBL] [Abstract][Full Text] [Related]
16. ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.
Kim N; Shin S; Lee S
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W181-6. PubMed ID: 15215376
[TBL] [Abstract][Full Text] [Related]
17. Integrating alternative splicing detection into gene prediction.
Foissac S; Schiex T
BMC Bioinformatics; 2005 Feb; 6():25. PubMed ID: 15705189
[TBL] [Abstract][Full Text] [Related]
18. ECgene: an alternative splicing database update.
Lee Y; Lee Y; Kim B; Shin Y; Nam S; Kim P; Kim N; Chung WH; Kim J; Lee S
Nucleic Acids Res; 2007 Jan; 35(Database issue):D99-103. PubMed ID: 17132829
[TBL] [Abstract][Full Text] [Related]
19. rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation.
Hwang JY; Jung S; Kook TL; Rouchka EC; Bok J; Park JW
Nucleic Acids Res; 2020 Jul; 48(W1):W300-W306. PubMed ID: 32286627
[TBL] [Abstract][Full Text] [Related]
20. SpliceVista, a tool for splice variant identification and visualization in shotgun proteomics data.
Zhu Y; Hultin-Rosenberg L; Forshed J; Branca RM; Orre LM; Lehtiö J
Mol Cell Proteomics; 2014 Jun; 13(6):1552-62. PubMed ID: 24692640
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
