These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

128 related articles for article (PubMed ID: 23679784)

  • 1. Elements of coevolution in biological sequences.
    Rivoire O
    Phys Rev Lett; 2013 Apr; 110(17):178102. PubMed ID: 23679784
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
    Gloor GB; Martin LC; Wahl LM; Dunn SD
    Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bioinformatics identification of coevolving residues.
    Dickson RJ; Gloor GB
    Methods Mol Biol; 2014; 1123():223-43. PubMed ID: 24510270
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Origins of coevolution between residues distant in protein 3D structures.
    Anishchenko I; Ovchinnikov S; Kamisetty H; Baker D
    Proc Natl Acad Sci U S A; 2017 Aug; 114(34):9122-9127. PubMed ID: 28784799
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence coevolution between RNA and protein characterized by mutual information between residue triplets.
    Brandman R; Brandman Y; Pande VS
    PLoS One; 2012; 7(1):e30022. PubMed ID: 22279560
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting coevolution in and among protein domains.
    Yeang CH; Haussler D
    PLoS Comput Biol; 2007 Nov; 3(11):e211. PubMed ID: 17983264
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
    Ouzounis C; Sander C; Scharf M; Schneider R
    J Mol Biol; 1993 Aug; 232(3):805-25. PubMed ID: 8355272
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Correlated mutations and residue contacts in proteins.
    Göbel U; Sander C; Schneider R; Valencia A
    Proteins; 1994 Apr; 18(4):309-17. PubMed ID: 8208723
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accurate simulation and detection of coevolution signals in multiple sequence alignments.
    Ackerman SH; Tillier ER; Gatti DL
    PLoS One; 2012; 7(10):e47108. PubMed ID: 23091608
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reducing the false positive rate in the non-parametric analysis of molecular coevolution.
    Codoñer FM; O'Dea S; Fares MA
    BMC Evol Biol; 2008 Apr; 8():106. PubMed ID: 18402697
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular evolution of protein conformational changes revealed by a network of evolutionarily coupled residues.
    Jeon J; Nam HJ; Choi YS; Yang JS; Hwang J; Kim S
    Mol Biol Evol; 2011 Sep; 28(9):2675-85. PubMed ID: 21470969
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction of contacts from correlated sequence substitutions.
    Taylor WR; Hamilton RS; Sadowski MI
    Curr Opin Struct Biol; 2013 Jun; 23(3):473-9. PubMed ID: 23680395
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.
    Fares MA; Travers SA
    Genetics; 2006 May; 173(1):9-23. PubMed ID: 16547113
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exploring a phylogenetic approach for the detection of correlated substitutions in proteins.
    Tuff P; Darlu P
    Mol Biol Evol; 2000 Nov; 17(11):1753-9. PubMed ID: 11070062
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Correlated substitution analysis and the prediction of amino acid structural contacts.
    Horner DS; Pirovano W; Pesole G
    Brief Bioinform; 2008 Jan; 9(1):46-56. PubMed ID: 18000015
    [TBL] [Abstract][Full Text] [Related]  

  • 16. How is structural divergence related to evolutionary information?
    Zea DJ; Monzon AM; Parisi G; Marino-Buslje C
    Mol Phylogenet Evol; 2018 Oct; 127():859-866. PubMed ID: 29953938
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
    Bastolla U; Porto M; Roman HE; Vendruscolo M
    BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of coevolving residues and coevolution potentials emphasizing structure, bond formation and catalytic coordination in protein evolution.
    Little DY; Chen L
    PLoS One; 2009; 4(3):e4762. PubMed ID: 19274093
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Selecton: a server for detecting evolutionary forces at a single amino-acid site.
    Doron-Faigenboim A; Stern A; Mayrose I; Bacharach E; Pupko T
    Bioinformatics; 2005 May; 21(9):2101-3. PubMed ID: 15647294
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Distinct stages of protein evolution as suggested by protein sequence analysis.
    Trifonov EN; Kirzhner A; Kirzhner VM; Berezovsky IN
    J Mol Evol; 2001; 53(4-5):394-401. PubMed ID: 11675599
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.