BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

275 related articles for article (PubMed ID: 23685613)

  • 1. Prediction of clustered RNA-binding protein motif sites in the mammalian genome.
    Zhang C; Lee KY; Swanson MS; Darnell RB
    Nucleic Acids Res; 2013 Aug; 41(14):6793-807. PubMed ID: 23685613
    [TBL] [Abstract][Full Text] [Related]  

  • 2. mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins.
    Weyn-Vanhentenryck SM; Zhang C
    Methods Mol Biol; 2016; 1421():215-26. PubMed ID: 26965268
    [TBL] [Abstract][Full Text] [Related]  

  • 3. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
    Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
    Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.
    Taliaferro JM; Lambert NJ; Sudmant PH; Dominguez D; Merkin JJ; Alexis MS; Bazile C; Burge CB
    Mol Cell; 2016 Oct; 64(2):294-306. PubMed ID: 27720642
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
    Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
    Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RBPmap: a web server for mapping binding sites of RNA-binding proteins.
    Paz I; Kosti I; Ares M; Cline M; Mandel-Gutfreund Y
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W361-7. PubMed ID: 24829458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Human protein-RNA interaction network is highly stable across mammals.
    Ramakrishnan A; Janga SC
    BMC Genomics; 2019 Dec; 20(Suppl 12):1004. PubMed ID: 31888461
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Leveraging cross-link modification events in CLIP-seq for motif discovery.
    Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
    Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PrismNet: predicting protein-RNA interaction using in vivo RNA structural information.
    Xu Y; Zhu J; Huang W; Xu K; Yang R; Zhang QC; Sun L
    Nucleic Acids Res; 2023 Jul; 51(W1):W468-W477. PubMed ID: 37140045
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.
    Heller D; Krestel R; Ohler U; Vingron M; Marsico A
    Nucleic Acids Res; 2017 Nov; 45(19):11004-11018. PubMed ID: 28977546
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.
    Sugimoto Y; König J; Hussain S; Zupan B; Curk T; Frye M; Ule J
    Genome Biol; 2012 Aug; 13(8):R67. PubMed ID: 22863408
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks.
    Pan X; Rijnbeek P; Yan J; Shen HB
    BMC Genomics; 2018 Jul; 19(1):511. PubMed ID: 29970003
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Developing global insight into RNA regulation.
    Darnell RB
    Cold Spring Harb Symp Quant Biol; 2006; 71():321-7. PubMed ID: 17381312
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RBPmap: A Tool for Mapping and Predicting the Binding Sites of RNA-Binding Proteins Considering the Motif Environment.
    Paz I; Argoetti A; Cohen N; Even N; Mandel-Gutfreund Y
    Methods Mol Biol; 2022; 2404():53-65. PubMed ID: 34694603
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
    Pan X; Shen HB
    BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An RNA map predicting Nova-dependent splicing regulation.
    Ule J; Stefani G; Mele A; Ruggiu M; Wang X; Taneri B; Gaasterland T; Blencowe BJ; Darnell RB
    Nature; 2006 Nov; 444(7119):580-6. PubMed ID: 17065982
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.
    Kazan H; Morris Q
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W180-6. PubMed ID: 23754853
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Finding RNA-Protein Interaction Sites Using HMMs.
    Wang T; Yun J; Xie Y; Xiao G
    Methods Mol Biol; 2017; 1552():177-184. PubMed ID: 28224499
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.
    Lambert NJ; Robertson AD; Burge CB
    Methods Enzymol; 2015; 558():465-493. PubMed ID: 26068750
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.