BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

186 related articles for article (PubMed ID: 23694698)

  • 1. Comparison of dimensional reduction methods for detecting and visualizing novel patterns in human and marine microbiome.
    Jiang X; Hu X; Xu W; He T; Park EK
    IEEE Trans Nanobioscience; 2013 Sep; 12(3):199-205. PubMed ID: 23694698
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploration of community traits as ecological markers in microbial metagenomes.
    Barberán A; Fernández-Guerra A; Bohannan BJ; Casamayor EO
    Mol Ecol; 2012 Apr; 21(8):1909-17. PubMed ID: 22121910
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Community-analyzer: a platform for visualizing and comparing microbial community structure across microbiomes.
    Kuntal BK; Ghosh TS; Mande SS
    Genomics; 2013 Oct; 102(4):409-18. PubMed ID: 23978768
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A metagenomic assessment of microbial eukaryotic diversity in the global ocean.
    Obiol A; Giner CR; Sánchez P; Duarte CM; Acinas SG; Massana R
    Mol Ecol Resour; 2020 May; 20(3):. PubMed ID: 32065492
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Profiling microbial strains in urban environments using metagenomic sequencing data.
    Zolfo M; Asnicar F; Manghi P; Pasolli E; Tett A; Segata N
    Biol Direct; 2018 May; 13(1):9. PubMed ID: 29743119
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quality control of microbiota metagenomics by k-mer analysis.
    Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M
    BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Four functional profiles for fibre and mucin metabolism in the human gut microbiome.
    Labarthe S; Plancade S; Raguideau S; Plaza Oñate F; Le Chatelier E; Leclerc M; Laroche B
    Microbiome; 2023 Oct; 11(1):231. PubMed ID: 37858269
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics.
    Cao S; Zhang W; Ding W; Wang M; Fan S; Yang B; Mcminn A; Wang M; Xie BB; Qin QL; Chen XL; He J; Zhang YZ
    Microbiome; 2020 Apr; 8(1):47. PubMed ID: 32241287
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles.
    Shaw GT; Pao YY; Wang D
    BMC Bioinformatics; 2016 Nov; 17(1):488. PubMed ID: 27887570
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Use of whole genome shotgun metagenomics: a practical guide for the microbiome-minded physician scientist.
    Ma J; Prince A; Aagaard KM
    Semin Reprod Med; 2014 Jan; 32(1):5-13. PubMed ID: 24390915
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Vikodak--A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets.
    Nagpal S; Haque MM; Mande SS
    PLoS One; 2016; 11(2):e0148347. PubMed ID: 26848568
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples.
    Lee J; Lee HT; Hong WY; Jang E; Kim J
    J Microbiol Methods; 2015 Aug; 115():121-8. PubMed ID: 26027543
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A metagenomic insight into our gut's microbiome.
    Lepage P; Leclerc MC; Joossens M; Mondot S; Blottière HM; Raes J; Ehrlich D; Doré J
    Gut; 2013 Jan; 62(1):146-58. PubMed ID: 22525886
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The impact of normalization and phylogenetic information on estimating the distance for metagenomes.
    Su CH; Wang TY; Hsu MT; Weng FC; Kao CY; Wang D; Tsai HK
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):619-28. PubMed ID: 21844636
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
    Nayfach S; Bradley PH; Wyman SK; Laurent TJ; Williams A; Eisen JA; Pollard KS; Sharpton TJ
    PLoS Comput Biol; 2015 Nov; 11(11):e1004573. PubMed ID: 26565399
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.
    Kristiansson E; Hugenholtz P; Dalevi D
    Bioinformatics; 2009 Oct; 25(20):2737-8. PubMed ID: 19696045
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ocean plankton. Structure and function of the global ocean microbiome.
    Sunagawa S; Coelho LP; Chaffron S; Kultima JR; Labadie K; Salazar G; Djahanschiri B; Zeller G; Mende DR; Alberti A; Cornejo-Castillo FM; Costea PI; Cruaud C; d'Ovidio F; Engelen S; Ferrera I; Gasol JM; Guidi L; Hildebrand F; Kokoszka F; Lepoivre C; Lima-Mendez G; Poulain J; Poulos BT; Royo-Llonch M; Sarmento H; Vieira-Silva S; Dimier C; Picheral M; Searson S; Kandels-Lewis S; ; Bowler C; de Vargas C; Gorsky G; Grimsley N; Hingamp P; Iudicone D; Jaillon O; Not F; Ogata H; Pesant S; Speich S; Stemmann L; Sullivan MB; Weissenbach J; Wincker P; Karsenti E; Raes J; Acinas SG; Bork P
    Science; 2015 May; 348(6237):1261359. PubMed ID: 25999513
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.
    Wang M; Doak TG; Ye Y
    Genome Biol; 2015 Nov; 16():243. PubMed ID: 26527161
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metagenomics: key to human gut microbiota.
    Maccaferri S; Biagi E; Brigidi P
    Dig Dis; 2011; 29(6):525-30. PubMed ID: 22179207
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.