These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 23695796)

  • 21. How to benchmark RNA secondary structure prediction accuracy.
    Mathews DH
    Methods; 2019 Jun; 162-163():60-67. PubMed ID: 30951834
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce.
    Zhang B; Yehdego DT; Johnson KL; Leung MY; Taufer M
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S3. PubMed ID: 24564983
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Estimating RNA Secondary Structure Folding Free Energy Changes with efn2.
    Zuber J; Mathews DH
    Methods Mol Biol; 2024; 2726():1-13. PubMed ID: 38780725
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
    Dowell RD; Eddy SR
    BMC Bioinformatics; 2006 Sep; 7():400. PubMed ID: 16952317
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Energy-directed RNA structure prediction.
    Hofacker IL
    Methods Mol Biol; 2014; 1097():71-84. PubMed ID: 24639155
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SARNA-Predict: accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
    Tsang HH; Wiese KC
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):727-40. PubMed ID: 21030739
    [TBL] [Abstract][Full Text] [Related]  

  • 27. GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops.
    Swenson MS; Anderson J; Ash A; Gaurav P; Sükösd Z; Bader DA; Harvey SC; Heitsch CE
    BMC Res Notes; 2012 Jul; 5():341. PubMed ID: 22747589
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Consensus folding of unaligned RNA sequences revisited.
    Bafna V; Tang H; Zhang S
    J Comput Biol; 2006 Mar; 13(2):283-95. PubMed ID: 16597240
    [TBL] [Abstract][Full Text] [Related]  

  • 29. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
    Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
    Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RiboDiffusion: tertiary structure-based RNA inverse folding with generative diffusion models.
    Huang H; Lin Z; He D; Hong L; Li Y
    Bioinformatics; 2024 Jun; 40(Supplement_1):i347-i356. PubMed ID: 38940178
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Limits in accuracy and a strategy of RNA structure prediction using experimental information.
    Wang J; Williams B; Chirasani VR; Krokhotin A; Das R; Dokholyan NV
    Nucleic Acids Res; 2019 Jun; 47(11):5563-5572. PubMed ID: 31106330
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures.
    Bleckley S; Stone JW; Schroeder SJ
    PLoS One; 2012; 7(12):e52414. PubMed ID: 23300665
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Transient RNA structure features are evolutionarily conserved and can be computationally predicted.
    Zhu JY; Steif A; Proctor JR; Meyer IM
    Nucleic Acids Res; 2013 Jul; 41(12):6273-85. PubMed ID: 23625966
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Free energy minimization to predict RNA secondary structures and computational RNA design.
    Churkin A; Weinbrand L; Barash D
    Methods Mol Biol; 2015; 1269():3-16. PubMed ID: 25577369
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
    Knudsen B; Hein J
    Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A semi-supervised learning approach for RNA secondary structure prediction.
    Yonemoto H; Asai K; Hamada M
    Comput Biol Chem; 2015 Aug; 57():72-9. PubMed ID: 25748534
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots.
    Thanh VH; Korpela D; Orponen P
    J Comput Biol; 2021 Sep; 28(9):892-908. PubMed ID: 33902324
    [No Abstract]   [Full Text] [Related]  

  • 38. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
    Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
    Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
    [TBL] [Abstract][Full Text] [Related]  

  • 39. How Parameters Influence SHAPE-Directed Predictions.
    Greenwood T; Heitsch CE
    Methods Mol Biol; 2024; 2726():105-124. PubMed ID: 38780729
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Thermodynamic matchers: strengthening the significance of RNA folding energies.
    Höchsmann T; Höchsmann M; Giegerich R
    Comput Syst Bioinformatics Conf; 2006; ():111-21. PubMed ID: 17369630
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.