172 related articles for article (PubMed ID: 23742907)
1. MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues.
Kaya C; Armutlulu A; Ekesan S; Haliloglu T
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W249-55. PubMed ID: 23742907
[TBL] [Abstract][Full Text] [Related]
2. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
Gerek ZN; Ozkan SB
PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
[TBL] [Abstract][Full Text] [Related]
3. Allosteric communication pathways and thermal rectification in PDZ-2 protein: a computational study.
Miño-Galaz GA
J Phys Chem B; 2015 May; 119(20):6179-89. PubMed ID: 25933631
[TBL] [Abstract][Full Text] [Related]
4. Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.
Hacisuleyman A; Erman B
Proteins; 2017 Jun; 85(6):1056-1064. PubMed ID: 28241380
[TBL] [Abstract][Full Text] [Related]
5. Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e.
Cilia E; Vuister GW; Lenaerts T
PLoS Comput Biol; 2012; 8(11):e1002794. PubMed ID: 23209399
[TBL] [Abstract][Full Text] [Related]
6. SPACER: Server for predicting allosteric communication and effects of regulation.
Goncearenco A; Mitternacht S; Yong T; Eisenhaber B; Eisenhaber F; Berezovsky IN
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W266-72. PubMed ID: 23737445
[TBL] [Abstract][Full Text] [Related]
7. Predicting allosteric communication in myosin via a pathway of conserved residues.
Tang S; Liao JC; Dunn AR; Altman RB; Spudich JA; Schmidt JP
J Mol Biol; 2007 Nov; 373(5):1361-73. PubMed ID: 17900617
[TBL] [Abstract][Full Text] [Related]
8. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
Kalescky R; Zhou H; Liu J; Tao P
PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
[TBL] [Abstract][Full Text] [Related]
9. The binding affinity of PTPN13's tandem PDZ2/3 domain is allosterically modulated.
Dicks M; Kock G; Kohl B; Zhong X; Pütz S; Heumann R; Erdmann KS; Stoll R
BMC Mol Cell Biol; 2019 Jul; 20(1):23. PubMed ID: 31286859
[TBL] [Abstract][Full Text] [Related]
10. ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules.
Mersmann SF; Strömich L; Song FJ; Wu N; Vianello F; Barahona M; Yaliraki SN
Nucleic Acids Res; 2021 Jul; 49(W1):W551-W558. PubMed ID: 33978752
[TBL] [Abstract][Full Text] [Related]
11. Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein.
Dhulesia A; Gsponer J; Vendruscolo M
J Am Chem Soc; 2008 Jul; 130(28):8931-9. PubMed ID: 18558679
[TBL] [Abstract][Full Text] [Related]
12. Prediction of allosteric communication pathways in proteins.
Haliloglu T; Hacisuleyman A; Erman B
Bioinformatics; 2022 Jul; 38(14):3590-3599. PubMed ID: 35674396
[TBL] [Abstract][Full Text] [Related]
13. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
Stetz G; Verkhivker GM
PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
[TBL] [Abstract][Full Text] [Related]
14. Prediction of Protein Allosteric Signalling Pathways and Functional Residues Through Paths of Optimised Propensity.
Wu N; Yaliraki SN; Barahona M
J Mol Biol; 2022 Sep; 434(17):167749. PubMed ID: 35841931
[TBL] [Abstract][Full Text] [Related]
15. An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity.
van den Berk LC; Landi E; Walma T; Vuister GW; Dente L; Hendriks WJ
Biochemistry; 2007 Nov; 46(47):13629-37. PubMed ID: 17979300
[TBL] [Abstract][Full Text] [Related]
16. Mapping the energetic and allosteric landscapes of protein binding domains.
Faure AJ; Domingo J; Schmiedel JM; Hidalgo-Carcedo C; Diss G; Lehner B
Nature; 2022 Apr; 604(7904):175-183. PubMed ID: 35388192
[TBL] [Abstract][Full Text] [Related]
17. Structure-based network analysis of activation mechanisms in the ErbB family of receptor tyrosine kinases: the regulatory spine residues are global mediators of structural stability and allosteric interactions.
James KA; Verkhivker GM
PLoS One; 2014; 9(11):e113488. PubMed ID: 25427151
[TBL] [Abstract][Full Text] [Related]
18. Residues crucial for maintaining short paths in network communication mediate signaling in proteins.
del Sol A; Fujihashi H; Amoros D; Nussinov R
Mol Syst Biol; 2006; 2():2006.0019. PubMed ID: 16738564
[TBL] [Abstract][Full Text] [Related]
19. Singular value decomposition for the correlation of atomic fluctuations with arbitrary angle.
Yu M; Ma X; Cao H; Chong B; Lai L; Liu Z
Proteins; 2018 Oct; 86(10):1075-1087. PubMed ID: 30019778
[TBL] [Abstract][Full Text] [Related]
20. Biophysical simulations and structure-based modeling of residue interaction networks in the tumor suppressor proteins reveal functional role of cancer mutation hotspots in molecular communication.
Verkhivker GM
Biochim Biophys Acta Gen Subj; 2019 Jan; 1863(1):210-225. PubMed ID: 30339916
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]