230 related articles for article (PubMed ID: 23761453)
1. The FunFOLD2 server for the prediction of protein-ligand interactions.
Roche DB; Buenavista MT; McGuffin LJ
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W303-7. PubMed ID: 23761453
[TBL] [Abstract][Full Text] [Related]
2. The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.
Roche DB; Buenavista MT; Tetchner SJ; McGuffin LJ
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W171-6. PubMed ID: 21459847
[TBL] [Abstract][Full Text] [Related]
3. IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.
McGuffin LJ; Atkins JD; Salehe BR; Shuid AN; Roche DB
Nucleic Acids Res; 2015 Jul; 43(W1):W169-73. PubMed ID: 25820431
[TBL] [Abstract][Full Text] [Related]
4. FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
Roche DB; Tetchner SJ; McGuffin LJ
BMC Bioinformatics; 2011 May; 12():160. PubMed ID: 21575183
[TBL] [Abstract][Full Text] [Related]
5. IntFOLD: an integrated web resource for high performance protein structure and function prediction.
McGuffin LJ; Adiyaman R; Maghrabi AHA; Shuid AN; Brackenridge DA; Nealon JO; Philomina LS
Nucleic Acids Res; 2019 Jul; 47(W1):W408-W413. PubMed ID: 31045208
[TBL] [Abstract][Full Text] [Related]
6. 3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN; Kelley LA; Sternberg MJ
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W469-73. PubMed ID: 20513649
[TBL] [Abstract][Full Text] [Related]
7. GalaxySite: ligand-binding-site prediction by using molecular docking.
Heo L; Shin WH; Lee MS; Seok C
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W210-4. PubMed ID: 24753427
[TBL] [Abstract][Full Text] [Related]
8. In silico Identification and Characterization of Protein-Ligand Binding Sites.
Roche DB; McGuffin LJ
Methods Mol Biol; 2016; 1414():1-21. PubMed ID: 27094282
[TBL] [Abstract][Full Text] [Related]
9. SITEHOUND-web: a server for ligand binding site identification in protein structures.
Hernandez M; Ghersi D; Sanchez R
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W413-6. PubMed ID: 19398430
[TBL] [Abstract][Full Text] [Related]
10. ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
Konc J; Janežič D
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W215-20. PubMed ID: 24861616
[TBL] [Abstract][Full Text] [Related]
11. FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions.
Roche DB; Buenavista MT; McGuffin LJ
PLoS One; 2012; 7(5):e38219. PubMed ID: 22666491
[TBL] [Abstract][Full Text] [Related]
12. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.
Konc J; Miller BT; Štular T; Lešnik S; Woodcock HL; Brooks BR; Janežič D
J Chem Inf Model; 2015 Nov; 55(11):2308-14. PubMed ID: 26509288
[TBL] [Abstract][Full Text] [Related]
13. The ModFOLD4 server for the quality assessment of 3D protein models.
McGuffin LJ; Buenavista MT; Roche DB
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W368-72. PubMed ID: 23620298
[TBL] [Abstract][Full Text] [Related]
14. PrankWeb: a web server for ligand binding site prediction and visualization.
Jendele L; Krivak R; Skoda P; Novotny M; Hoksza D
Nucleic Acids Res; 2019 Jul; 47(W1):W345-W349. PubMed ID: 31114880
[TBL] [Abstract][Full Text] [Related]
15. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V
J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894
[TBL] [Abstract][Full Text] [Related]
16. LigSearch: a knowledge-based web server to identify likely ligands for a protein target.
de Beer TA; Laskowski RA; Duban ME; Chan AW; Anderson WF; Thornton JM
Acta Crystallogr D Biol Crystallogr; 2013 Dec; 69(Pt 12):2395-402. PubMed ID: 24311580
[TBL] [Abstract][Full Text] [Related]
17. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
Tan KP; Varadarajan R; Madhusudhan MS
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W242-8. PubMed ID: 21576233
[TBL] [Abstract][Full Text] [Related]
18. LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sites.
Xie ZR; Liu CK; Hsiao FC; Yao A; Hwang MJ
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W292-6. PubMed ID: 23609546
[TBL] [Abstract][Full Text] [Related]
19. webPDBinder: a server for the identification of ligand binding sites on protein structures.
Bianchi V; Mangone I; Ferrè F; Helmer-Citterich M; Ausiello G
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W308-13. PubMed ID: 23737450
[TBL] [Abstract][Full Text] [Related]
20. PESDserv: a server for high-throughput comparison of protein binding site surfaces.
Das S; Krein MP; Breneman CM
Bioinformatics; 2010 Aug; 26(15):1913-4. PubMed ID: 20538727
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
