These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 23782612)

  • 1. Exact algorithms for haplotype assembly from whole-genome sequence data.
    Chen ZZ; Deng F; Wang L
    Bioinformatics; 2013 Aug; 29(16):1938-45. PubMed ID: 23782612
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Better ILP models for haplotype assembly.
    Etemadi M; Bagherian M; Chen ZZ; Wang L
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):52. PubMed ID: 29504891
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Better ILP-Based Approaches to Haplotype Assembly.
    Chen ZZ; Deng F; Shen C; Wang Y; Wang L
    J Comput Biol; 2016 Jul; 23(7):537-52. PubMed ID: 27347882
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
    Tangherloni A; Spolaor S; Rundo L; Nobile MS; Cazzaniga P; Mauri G; Liò P; Merelli I; Besozzi D
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):172. PubMed ID: 30999845
    [TBL] [Abstract][Full Text] [Related]  

  • 5. On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.
    Bonizzoni P; Dondi R; Klau GW; Pirola Y; Pisanti N; Zaccaria S
    J Comput Biol; 2016 Sep; 23(9):718-36. PubMed ID: 27280382
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Optimal algorithms for haplotype assembly from whole-genome sequence data.
    He D; Choi A; Pipatsrisawat K; Darwiche A; Eskin E
    Bioinformatics; 2010 Jun; 26(12):i183-90. PubMed ID: 20529904
    [TBL] [Abstract][Full Text] [Related]  

  • 7. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
    Patterson M; Marschall T; Pisanti N; van Iersel L; Stougie L; Klau GW; Schönhuth A
    J Comput Biol; 2015 Jun; 22(6):498-509. PubMed ID: 25658651
    [TBL] [Abstract][Full Text] [Related]  

  • 8. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
    Beretta S; Patterson MD; Zaccaria S; Della Vedova G; Bonizzoni P
    BMC Bioinformatics; 2018 Jul; 19(1):252. PubMed ID: 29970002
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data.
    Guo F; Wang D; Wang L
    Bioinformatics; 2018 Jun; 34(12):2012-2018. PubMed ID: 29474523
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Haplotype reconstruction from SNP fragments by minimum error correction.
    Wang RS; Wu LY; Li ZP; Zhang XS
    Bioinformatics; 2005 May; 21(10):2456-62. PubMed ID: 15731204
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A highly accurate heuristic algorithm for the haplotype assembly problem.
    Deng F; Cui W; Wang L
    BMC Genomics; 2013; 14 Suppl 2(Suppl 2):S2. PubMed ID: 23445458
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Minimum error correction-based haplotype assembly: Considerations for long read data.
    Majidian S; Kahaei MH; de Ridder D
    PLoS One; 2020; 15(6):e0234470. PubMed ID: 32530974
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
    Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
    Gigascience; 2022 May; 11():. PubMed ID: 35579550
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.
    Ahn S; Vikalo H
    BMC Bioinformatics; 2015 Jul; 16():223. PubMed ID: 26178880
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Haplotyping as perfect phylogeny: a direct approach.
    Bafna V; Gusfield D; Lancia G; Yooseph S
    J Comput Biol; 2003; 10(3-4):323-40. PubMed ID: 12935331
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.
    Bansal V; Bafna V
    Bioinformatics; 2008 Aug; 24(16):i153-9. PubMed ID: 18689818
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data.
    He D; Han B; Eskin E
    J Comput Biol; 2013 Feb; 20(2):80-92. PubMed ID: 23383995
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Decoding Genetic Variations: Communications-Inspired Haplotype Assembly.
    Puljiz Z; Vikalo H
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(3):518-30. PubMed ID: 27295635
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids.
    Hashemi A; Zhu B; Vikalo H
    BMC Genomics; 2018 Mar; 19(Suppl 4):191. PubMed ID: 29589554
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.