492 related articles for article (PubMed ID: 23788466)
1. Computational protein design with electrostatic focusing: experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet.
Suárez-Diez M; Pujol AM; Matzapetakis M; Jaramillo A; Iranzo O
Biotechnol J; 2013 Jul; 8(7):855-64. PubMed ID: 23788466
[TBL] [Abstract][Full Text] [Related]
2. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
3. Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study.
Klepeis JL; Wei Y; Hecht MH; Floudas CA
Proteins; 2005 Feb; 58(3):560-70. PubMed ID: 15609306
[TBL] [Abstract][Full Text] [Related]
4. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
5. Challenges in the computational design of proteins.
Suárez M; Jaramillo A
J R Soc Interface; 2009 Aug; 6 Suppl 4(Suppl 4):S477-91. PubMed ID: 19324680
[TBL] [Abstract][Full Text] [Related]
6. Protein design for diversity of sequences and conformations using dead-end elimination.
Hanf KJ
Methods Mol Biol; 2012; 899():127-44. PubMed ID: 22735950
[TBL] [Abstract][Full Text] [Related]
7. Incorporating receptor flexibility in the molecular design of protein interfaces.
Li L; Liang S; Pilcher MM; Meroueh SO
Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
[TBL] [Abstract][Full Text] [Related]
8. Enzyme-like proteins from an unselected library of designed amino acid sequences.
Wei Y; Hecht MH
Protein Eng Des Sel; 2004 Jan; 17(1):67-75. PubMed ID: 14985539
[TBL] [Abstract][Full Text] [Related]
9. Exploring local and non-local interactions for protein stability by structural motif engineering.
Niggemann M; Steipe B
J Mol Biol; 2000 Feb; 296(1):181-95. PubMed ID: 10656826
[TBL] [Abstract][Full Text] [Related]
10. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
Hassan SA; Mehler EL; Zhang D; Weinstein H
Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
[TBL] [Abstract][Full Text] [Related]
11. De novo protein design. I. In search of stability and specificity.
Koehl P; Levitt M
J Mol Biol; 1999 Nov; 293(5):1161-81. PubMed ID: 10547293
[TBL] [Abstract][Full Text] [Related]
12. Computational protein design with a generalized Born solvent model: application to Asparaginyl-tRNA synthetase.
Polydorides S; Amara N; Aubard C; Plateau P; Simonson T; Archontis G
Proteins; 2011 Dec; 79(12):3448-68. PubMed ID: 21563215
[TBL] [Abstract][Full Text] [Related]
13. Solution structure of a de novo protein from a designed combinatorial library.
Wei Y; Kim S; Fela D; Baum J; Hecht MH
Proc Natl Acad Sci U S A; 2003 Nov; 100(23):13270-3. PubMed ID: 14593201
[TBL] [Abstract][Full Text] [Related]
14. De novo protein design. II. Plasticity in sequence space.
Koehl P; Levitt M
J Mol Biol; 1999 Nov; 293(5):1183-93. PubMed ID: 10547294
[TBL] [Abstract][Full Text] [Related]
15. Hydrophobic core malleability of a de novo designed three-helix bundle protein.
Walsh ST; Sukharev VI; Betz SF; Vekshin NL; DeGrado WF
J Mol Biol; 2001 Jan; 305(2):361-73. PubMed ID: 11124911
[TBL] [Abstract][Full Text] [Related]
16. A computational approach to simplifying the protein folding alphabet.
Wang J; Wang W
Nat Struct Biol; 1999 Nov; 6(11):1033-8. PubMed ID: 10542095
[TBL] [Abstract][Full Text] [Related]
17. Computational protein design: software implementation, parameter optimization, and performance of a simple model.
Schmidt Am Busch M; Lopes A; Mignon D; Simonson T
J Comput Chem; 2008 May; 29(7):1092-102. PubMed ID: 18069664
[TBL] [Abstract][Full Text] [Related]
18. What is the protein design alphabet?
Dokholyan NV
Proteins; 2004 Mar; 54(4):622-8. PubMed ID: 14997558
[TBL] [Abstract][Full Text] [Related]
19. Non-native local interactions in protein folding and stability: introducing a helical tendency in the all beta-sheet alpha-spectrin SH3 domain.
Prieto J; Wilmans M; Jiménez MA; Rico M; Serrano L
J Mol Biol; 1997 May; 268(4):760-78. PubMed ID: 9175859
[TBL] [Abstract][Full Text] [Related]
20. A systematic study of fundamentals in α-helical coiled coil mimicry by alternating sequences of β- and γ-amino acids.
Rezaei Araghi R; Baldauf C; Gerling UI; Cadicamo CD; Koksch B
Amino Acids; 2011 Aug; 41(3):733-42. PubMed ID: 21638022
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]