141 related articles for article (PubMed ID: 23803467)
21. JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N; Thomas A; Watanabe L; Vazirabad IY; Kofia V; Gómez HF; Mittag F; Matthes J; Rudolph J; Wrzodek F; Netz E; Diamantikos A; Eichner J; Keller R; Wrzodek C; Fröhlich S; Lewis NE; Myers CJ; Le Novère N; Palsson BØ; Hucka M; Dräger A
Bioinformatics; 2015 Oct; 31(20):3383-6. PubMed ID: 26079347
[TBL] [Abstract][Full Text] [Related]
22. SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks.
Dräger A; Hassis N; Supper J; Schröder A; Zell A
BMC Syst Biol; 2008 Apr; 2():39. PubMed ID: 18447902
[TBL] [Abstract][Full Text] [Related]
23. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
24. SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM; Bornstein BJ; Finney A; Hucka M
Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
[TBL] [Abstract][Full Text] [Related]
25. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
Taylor RC; Singhal M; Weller J; Khoshnevis S; Shi L; McDermott J
Ann N Y Acad Sci; 2009 Mar; 1158():143-58. PubMed ID: 19348639
[TBL] [Abstract][Full Text] [Related]
26. GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.
Moerman T; Aibar Santos S; Bravo González-Blas C; Simm J; Moreau Y; Aerts J; Aerts S
Bioinformatics; 2019 Jun; 35(12):2159-2161. PubMed ID: 30445495
[TBL] [Abstract][Full Text] [Related]
27. MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.
Forth T; McConkey GA; Westhead DR
Bioinformatics; 2010 Sep; 26(18):2352-3. PubMed ID: 20671147
[TBL] [Abstract][Full Text] [Related]
28. SIMoNe: Statistical Inference for MOdular NEtworks.
Chiquet J; Smith A; Grasseau G; Matias C; Ambroise C
Bioinformatics; 2009 Feb; 25(3):417-8. PubMed ID: 19073589
[TBL] [Abstract][Full Text] [Related]
29. An application programming interface for CellNetAnalyzer.
Klamt S; von Kamp A
Biosystems; 2011 Aug; 105(2):162-8. PubMed ID: 21315797
[TBL] [Abstract][Full Text] [Related]
30. PiNGO: a Cytoscape plugin to find candidate genes in biological networks.
Smoot M; Ono K; Ideker T; Maere S
Bioinformatics; 2011 Apr; 27(7):1030-1. PubMed ID: 21278188
[TBL] [Abstract][Full Text] [Related]
31. SEBINI: Software Environment for BIological Network Inference.
Taylor RC; Shah A; Treatman C; Blevins M
Bioinformatics; 2006 Nov; 22(21):2706-8. PubMed ID: 16954144
[TBL] [Abstract][Full Text] [Related]
32. CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Schneider J; Vorhölter FJ; Trost E; Blom J; Musa YR; Neuweger H; Niehaus K; Schatschneider S; Tauch A; Goesmann A
Genet Mol Res; 2010 Aug; 9(3):1660-72. PubMed ID: 20799163
[TBL] [Abstract][Full Text] [Related]
33. FlexFlux: combining metabolic flux and regulatory network analyses.
Marmiesse L; Peyraud R; Cottret L
BMC Syst Biol; 2015 Dec; 9():93. PubMed ID: 26666757
[TBL] [Abstract][Full Text] [Related]
34. SPNConverter: a new link between static and dynamic complex network analysis.
Dent JE; Yang X; Nardini C
Bioinformatics; 2013 Oct; 29(19):2507-8. PubMed ID: 23908262
[TBL] [Abstract][Full Text] [Related]
35. BioPP: a tool for web-publication of biological networks.
Viswanathan GA; Nudelman G; Patil S; Sealfon SC
BMC Bioinformatics; 2007 May; 8():168. PubMed ID: 17519033
[TBL] [Abstract][Full Text] [Related]
36. Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.
Sütterlin T; Kolb C; Dickhaus H; Jäger D; Grabe N
Bioinformatics; 2013 Jan; 29(2):223-9. PubMed ID: 23162085
[TBL] [Abstract][Full Text] [Related]
37. XQTav: an XQuery processor for Taverna environment.
Sroka J; Kaczor G; Tyszkiewicz J; Kierzek AM
Bioinformatics; 2006 May; 22(10):1280-1. PubMed ID: 16551662
[TBL] [Abstract][Full Text] [Related]
38. Tools for the SBML Community.
Gillespie CS; Wilkinson DJ; Proctor CJ; Shanley DP; Boys RJ; Kirkwood TB
Bioinformatics; 2006 Mar; 22(5):628-9. PubMed ID: 16410323
[TBL] [Abstract][Full Text] [Related]
39. Automated manipulation of systems biology models using libSBML within Taverna workflows.
Li P; Oinn T; Soiland S; Kell DB
Bioinformatics; 2008 Jan; 24(2):287-9. PubMed ID: 18056069
[TBL] [Abstract][Full Text] [Related]
40. SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.
Balci H; Dogrusoz U; Ozgul YZ; Atayev P
PLoS Comput Biol; 2022 Nov; 18(11):e1010635. PubMed ID: 36374853
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
