These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
140 related articles for article (PubMed ID: 23803467)
41. CySBML: a Cytoscape plugin for SBML. König M; Dräger A; Holzhütter HG Bioinformatics; 2012 Sep; 28(18):2402-3. PubMed ID: 22772946 [TBL] [Abstract][Full Text] [Related]
42. BoolNet--an R package for generation, reconstruction and analysis of Boolean networks. Müssel C; Hopfensitz M; Kestler HA Bioinformatics; 2010 May; 26(10):1378-80. PubMed ID: 20378558 [TBL] [Abstract][Full Text] [Related]
43. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks. König M; Holzhütter HG Genome Inform; 2010; 24():96-103. PubMed ID: 22081592 [TBL] [Abstract][Full Text] [Related]
44. Supporting SBML as a model exchange format in software applications. Keating SM; Le Novère N Methods Mol Biol; 2013; 1021():201-25. PubMed ID: 23715987 [TBL] [Abstract][Full Text] [Related]
49. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks. Machné R; Finney A; Müller S; Lu J; Widder S; Flamm C Bioinformatics; 2006 Jun; 22(11):1406-7. PubMed ID: 16527832 [TBL] [Abstract][Full Text] [Related]
50. GNET2: an R package for constructing gene regulatory networks from transcriptomic data. Chen C; Hou J; Shi X; Yang H; Birchler JA; Cheng J Bioinformatics; 2021 Aug; 37(14):2068-2069. PubMed ID: 33270838 [TBL] [Abstract][Full Text] [Related]
51. Metatool 5.0: fast and flexible elementary modes analysis. von Kamp A; Schuster S Bioinformatics; 2006 Aug; 22(15):1930-1. PubMed ID: 16731697 [TBL] [Abstract][Full Text] [Related]
52. The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core. Gauges R; Rost U; Sahle S; Wengler K; Bergmann FT J Integr Bioinform; 2015 Sep; 12(2):267. PubMed ID: 26528565 [TBL] [Abstract][Full Text] [Related]
53. Using process diagrams for the graphical representation of biological networks. Kitano H; Funahashi A; Matsuoka Y; Oda K Nat Biotechnol; 2005 Aug; 23(8):961-6. PubMed ID: 16082367 [TBL] [Abstract][Full Text] [Related]
54. Addressing false discoveries in network inference. Petri T; Altmann S; Geistlinger L; Zimmer R; Küffner R Bioinformatics; 2015 Sep; 31(17):2836-43. PubMed ID: 25910697 [TBL] [Abstract][Full Text] [Related]
55. KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring. Tian Y; Zhang B; Hoffman EP; Clarke R; Zhang Z; Shih IeM; Xuan J; Herrington DM; Wang Y Bioinformatics; 2015 Jan; 31(2):287-9. PubMed ID: 25273109 [TBL] [Abstract][Full Text] [Related]
56. The markup is the model: reasoning about systems biology models in the Semantic Web era. Kell DB; Mendes P J Theor Biol; 2008 Jun; 252(3):538-43. PubMed ID: 18054049 [TBL] [Abstract][Full Text] [Related]
57. MOST: a software environment for constraint-based metabolic modeling and strain design. Kelley JJ; Lane A; Li X; Mutthoju B; Maor S; Egen D; Lun DS Bioinformatics; 2015 Feb; 31(4):610-1. PubMed ID: 25677126 [TBL] [Abstract][Full Text] [Related]
58. MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory. Marchetti L; Manca V Bioinformatics; 2015 Apr; 31(8):1328-30. PubMed ID: 25504849 [TBL] [Abstract][Full Text] [Related]
59. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. Balaur I; Roy L; Mazein A; Karaca SG; Dogrusoz U; Barillot E; Zinovyev A Bioinformatics; 2020 Apr; 36(8):2620-2622. PubMed ID: 31904823 [TBL] [Abstract][Full Text] [Related]
60. FluxModeCalculator: an efficient tool for large-scale flux mode computation. van Klinken JB; Willems van Dijk K Bioinformatics; 2016 Apr; 32(8):1265-6. PubMed ID: 26685305 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]