647 related articles for article (PubMed ID: 23804401)
1. Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.
Stevens M; Cheng JB; Li D; Xie M; Hong C; Maire CL; Ligon KL; Hirst M; Marra MA; Costello JF; Wang T
Genome Res; 2013 Sep; 23(9):1541-53. PubMed ID: 23804401
[TBL] [Abstract][Full Text] [Related]
2. Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq.
Xing X; Zhang B; Li D; Wang T
Methods Mol Biol; 2018; 1708():209-246. PubMed ID: 29224147
[TBL] [Abstract][Full Text] [Related]
3. Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.
Li D; Zhang B; Xing X; Wang T
Methods; 2015 Jan; 72():29-40. PubMed ID: 25448294
[TBL] [Abstract][Full Text] [Related]
4. Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.
Zhang B; Zhou Y; Lin N; Lowdon RF; Hong C; Nagarajan RP; Cheng JB; Li D; Stevens M; Lee HJ; Xing X; Zhou J; Sundaram V; Elliott G; Gu J; Shi T; Gascard P; Sigaroudinia M; Tlsty TD; Kadlecek T; Weiss A; O'Geen H; Farnham PJ; Maire CL; Ligon KL; Madden PA; Tam A; Moore R; Hirst M; Marra MA; Zhang B; Costello JF; Wang T
Genome Res; 2013 Sep; 23(9):1522-40. PubMed ID: 23804400
[TBL] [Abstract][Full Text] [Related]
5. DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS).
Bonora G; Rubbi L; Morselli M; Ma F; Chronis C; Plath K; Pellegrini M
PLoS One; 2019; 14(4):e0214368. PubMed ID: 30946758
[TBL] [Abstract][Full Text] [Related]
6. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Harris RA; Wang T; Coarfa C; Nagarajan RP; Hong C; Downey SL; Johnson BE; Fouse SD; Delaney A; Zhao Y; Olshen A; Ballinger T; Zhou X; Forsberg KJ; Gu J; Echipare L; O'Geen H; Lister R; Pelizzola M; Xi Y; Epstein CB; Bernstein BE; Hawkins RD; Ren B; Chung WY; Gu H; Bock C; Gnirke A; Zhang MQ; Haussler D; Ecker JR; Li W; Farnham PJ; Waterland RA; Meissner A; Marra MA; Hirst M; Milosavljevic A; Costello JF
Nat Biotechnol; 2010 Oct; 28(10):1097-105. PubMed ID: 20852635
[TBL] [Abstract][Full Text] [Related]
7. Analyzing the cancer methylome through targeted bisulfite sequencing.
Lee EJ; Luo J; Wilson JM; Shi H
Cancer Lett; 2013 Nov; 340(2):171-8. PubMed ID: 23200671
[TBL] [Abstract][Full Text] [Related]
8. DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA.
Jia Z; Shi Y; Zhang L; Ren Y; Wang T; Xing L; Zhang B; Gao G; Bu R
BMC Biotechnol; 2018 Feb; 18(1):7. PubMed ID: 29409498
[TBL] [Abstract][Full Text] [Related]
9. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
[TBL] [Abstract][Full Text] [Related]
10. MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data.
Xu J; Liu S; Yin P; Bulun S; Dai Y
BMC Bioinformatics; 2018 Dec; 19(1):540. PubMed ID: 30577750
[TBL] [Abstract][Full Text] [Related]
11. DNA Methylation Analysis.
Feng L; Lou J
Methods Mol Biol; 2019; 1894():181-227. PubMed ID: 30547463
[TBL] [Abstract][Full Text] [Related]
12. Capture Methylation-Sensitive Restriction Enzyme Sequencing (Capture MRE-Seq) for Methylation Analysis of Highly Degraded DNA Samples.
Xing X; Karlow JA; Li D; Jang HS; Lee HJ; Wang T
Methods Mol Biol; 2023; 2621():73-89. PubMed ID: 37041441
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons.
Beck D; Ben Maamar M; Skinner MK
Epigenetics; 2022 May; 17(5):518-530. PubMed ID: 33975521
[TBL] [Abstract][Full Text] [Related]
14. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
[TBL] [Abstract][Full Text] [Related]
15. Genome-scale DNA methylation analysis.
Fouse SD; Nagarajan RO; Costello JF
Epigenomics; 2010 Feb; 2(1):105-17. PubMed ID: 20657796
[TBL] [Abstract][Full Text] [Related]
16. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
[TBL] [Abstract][Full Text] [Related]
17. A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling.
Clark C; Palta P; Joyce CJ; Scott C; Grundberg E; Deloukas P; Palotie A; Coffey AJ
PLoS One; 2012; 7(11):e50233. PubMed ID: 23209683
[TBL] [Abstract][Full Text] [Related]
18. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
19. MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation.
Lu RJ; Lin PY; Yen MR; Wu BH; Chen PY
Bot Stud; 2023 Jan; 64(1):1. PubMed ID: 36607439
[TBL] [Abstract][Full Text] [Related]
20. Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.
Wang J; Xia Y; Li L; Gong D; Yao Y; Luo H; Lu H; Yi N; Wu H; Zhang X; Tao Q; Gao F
BMC Genomics; 2013 Jan; 14():11. PubMed ID: 23324053
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]