334 related articles for article (PubMed ID: 23805837)
1. Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.
He X; Chatterjee R; John S; Bravo H; Sathyanarayana BK; Biddie SC; FitzGerald PC; Stamatoyannopoulos JA; Hager GL; Vinson C
BMC Genomics; 2013 Jun; 14():428. PubMed ID: 23805837
[TBL] [Abstract][Full Text] [Related]
2. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
Wang J; Zhuang J; Iyer S; Lin X; Whitfield TW; Greven MC; Pierce BG; Dong X; Kundaje A; Cheng Y; Rando OJ; Birney E; Myers RM; Noble WS; Snyder M; Weng Z
Genome Res; 2012 Sep; 22(9):1798-812. PubMed ID: 22955990
[TBL] [Abstract][Full Text] [Related]
3. Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local.
Goh WS; Orlov Y; Li J; Clarke ND
PLoS Comput Biol; 2010 Jan; 6(1):e1000649. PubMed ID: 20098497
[TBL] [Abstract][Full Text] [Related]
4. Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.
Nie Y; Cheng X; Chen J; Sun X
BMC Genomics; 2014 Jun; 15(1):493. PubMed ID: 24942981
[TBL] [Abstract][Full Text] [Related]
5. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
Afek A; Cohen H; Barber-Zucker S; Gordân R; Lukatsky DB
PLoS Comput Biol; 2015 Aug; 11(8):e1004429. PubMed ID: 26285121
[TBL] [Abstract][Full Text] [Related]
6. Mapping nucleosome positions using DNase-seq.
Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
[TBL] [Abstract][Full Text] [Related]
7. Conventional and pioneer modes of glucocorticoid receptor interaction with enhancer chromatin in vivo.
Johnson TA; Chereji RV; Stavreva DA; Morris SA; Hager GL; Clark DJ
Nucleic Acids Res; 2018 Jan; 46(1):203-214. PubMed ID: 29126175
[TBL] [Abstract][Full Text] [Related]
8. Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals.
Halder K; Halder R; Chowdhury S
Mol Biosyst; 2009 Dec; 5(12):1703-12. PubMed ID: 19587895
[TBL] [Abstract][Full Text] [Related]
9. Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins.
Chatterjee R; Zhao J; He X; Shlyakhtenko A; Mann I; Waterfall JJ; Meltzer P; Sathyanarayana BK; FitzGerald PC; Vinson C
G3 (Bethesda); 2012 Oct; 2(10):1243-56. PubMed ID: 23050235
[TBL] [Abstract][Full Text] [Related]
10. The interaction landscape between transcription factors and the nucleosome.
Zhu F; Farnung L; Kaasinen E; Sahu B; Yin Y; Wei B; Dodonova SO; Nitta KR; Morgunova E; Taipale M; Cramer P; Taipale J
Nature; 2018 Oct; 562(7725):76-81. PubMed ID: 30250250
[TBL] [Abstract][Full Text] [Related]
11. C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements.
Grøntved L; John S; Baek S; Liu Y; Buckley JR; Vinson C; Aguilera G; Hager GL
EMBO J; 2013 May; 32(11):1568-83. PubMed ID: 23665916
[TBL] [Abstract][Full Text] [Related]
12. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
13. Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.
Soufi A; Garcia MF; Jaroszewicz A; Osman N; Pellegrini M; Zaret KS
Cell; 2015 Apr; 161(3):555-568. PubMed ID: 25892221
[TBL] [Abstract][Full Text] [Related]
14. The DNA-encoded nucleosome organization of a eukaryotic genome.
Kaplan N; Moore IK; Fondufe-Mittendorf Y; Gossett AJ; Tillo D; Field Y; LeProust EM; Hughes TR; Lieb JD; Widom J; Segal E
Nature; 2009 Mar; 458(7236):362-6. PubMed ID: 19092803
[TBL] [Abstract][Full Text] [Related]
15. Different chromatin and DNA sequence characteristics define glucocorticoid receptor binding sites that are blocked or not blocked by coregulator Hic-5.
Lee BH; Stallcup MR
PLoS One; 2018; 13(5):e0196965. PubMed ID: 29738565
[TBL] [Abstract][Full Text] [Related]
16. Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.
Ozonov EA; van Nimwegen E
PLoS Comput Biol; 2013; 9(8):e1003181. PubMed ID: 23990766
[TBL] [Abstract][Full Text] [Related]
17. Structural Features of Transcription Factors Associating with Nucleosome Binding.
Fernandez Garcia M; Moore CD; Schulz KN; Alberto O; Donague G; Harrison MM; Zhu H; Zaret KS
Mol Cell; 2019 Sep; 75(5):921-932.e6. PubMed ID: 31303471
[TBL] [Abstract][Full Text] [Related]
18. A genomic code for nucleosome positioning.
Segal E; Fondufe-Mittendorf Y; Chen L; Thåström A; Field Y; Moore IK; Wang JP; Widom J
Nature; 2006 Aug; 442(7104):772-8. PubMed ID: 16862119
[TBL] [Abstract][Full Text] [Related]
19. Systematic Study of Nucleosome-Displacing Factors in Budding Yeast.
Yan C; Chen H; Bai L
Mol Cell; 2018 Jul; 71(2):294-305.e4. PubMed ID: 30017582
[TBL] [Abstract][Full Text] [Related]
20. Identifying cooperative transcription factors in yeast using multiple data sources.
Lai FJ; Jhu MH; Chiu CC; Huang YM; Wu WS
BMC Syst Biol; 2014; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]