304 related articles for article (PubMed ID: 23812985)
1. Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding.
Cannistraci CV; Alanis-Lobato G; Ravasi T
Bioinformatics; 2013 Jul; 29(13):i199-209. PubMed ID: 23812985
[TBL] [Abstract][Full Text] [Related]
2. Graph embedding-based novel protein interaction prediction via higher-order graph convolutional network.
Xiao Z; Deng Y
PLoS One; 2020; 15(9):e0238915. PubMed ID: 32970681
[TBL] [Abstract][Full Text] [Related]
3. Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.
Cannistraci CV; Ravasi T; Montevecchi FM; Ideker T; Alessio M
Bioinformatics; 2010 Sep; 26(18):i531-9. PubMed ID: 20823318
[TBL] [Abstract][Full Text] [Related]
4. Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.
You ZH; Lei YK; Gui J; Huang DS; Zhou X
Bioinformatics; 2010 Nov; 26(21):2744-51. PubMed ID: 20817744
[TBL] [Abstract][Full Text] [Related]
5. A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks.
Zhu L; Deng SP; Huang DS
IEEE Trans Nanobioscience; 2015 Jul; 14(5):528-34. PubMed ID: 25861086
[TBL] [Abstract][Full Text] [Related]
6. DSSGNN-PPI: A Protein-Protein Interactions prediction model based on Double Structure and Sequence graph neural networks.
Zhang F; Chang S; Wang B; Zhang X
Comput Biol Med; 2024 Jul; 177():108669. PubMed ID: 38833802
[TBL] [Abstract][Full Text] [Related]
7. Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding.
Zhu L; Deng SP; You ZH; Huang DS
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(2):345-352. PubMed ID: 28368812
[TBL] [Abstract][Full Text] [Related]
8. L-GRAAL: Lagrangian graphlet-based network aligner.
Malod-Dognin N; Pržulj N
Bioinformatics; 2015 Jul; 31(13):2182-9. PubMed ID: 25725498
[TBL] [Abstract][Full Text] [Related]
9. Protein complexes identification based on go attributed network embedding.
Xu B; Li K; Zheng W; Liu X; Zhang Y; Zhao Z; He Z
BMC Bioinformatics; 2018 Dec; 19(1):535. PubMed ID: 30572820
[TBL] [Abstract][Full Text] [Related]
10. RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.
Alkan F; Erten C
Bioinformatics; 2017 Feb; 33(4):537-544. PubMed ID: 27797764
[TBL] [Abstract][Full Text] [Related]
11. ppiPre: predicting protein-protein interactions by combining heterogeneous features.
Deng Y; Gao L; Wang B
BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S8. PubMed ID: 24565177
[TBL] [Abstract][Full Text] [Related]
12. IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks.
Yerneni S; Khan IK; Wei Q; Kihara D
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(4):1247-1258. PubMed ID: 26415209
[TBL] [Abstract][Full Text] [Related]
13. Highly Accurate Prediction of Protein-Protein Interactions via Incorporating Evolutionary Information and Physicochemical Characteristics.
Li ZW; You ZH; Chen X; Gui J; Nie R
Int J Mol Sci; 2016 Aug; 17(9):. PubMed ID: 27571061
[TBL] [Abstract][Full Text] [Related]
14. Fitting a geometric graph to a protein-protein interaction network.
Higham DJ; Rasajski M; Przulj N
Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
[TBL] [Abstract][Full Text] [Related]
15. Predicting lncRNA-disease associations using network topological similarity based on deep mining heterogeneous networks.
Zhang H; Liang Y; Peng C; Han S; Du W; Li Y
Math Biosci; 2019 Sep; 315():108229. PubMed ID: 31323239
[TBL] [Abstract][Full Text] [Related]
16. Linear functional organization of the omic embedding space.
Xenos A; Malod-Dognin N; Milinković S; Pržulj N
Bioinformatics; 2021 Nov; 37(21):3839-3847. PubMed ID: 34213534
[TBL] [Abstract][Full Text] [Related]
17. Geometric de-noising of protein-protein interaction networks.
Kuchaiev O; Rasajski M; Higham DJ; Przulj N
PLoS Comput Biol; 2009 Aug; 5(8):e1000454. PubMed ID: 19662157
[TBL] [Abstract][Full Text] [Related]
18. Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.
Murakami Y; Mizuguchi K
BMC Bioinformatics; 2014 Jun; 15():213. PubMed ID: 24953126
[TBL] [Abstract][Full Text] [Related]
19. Reconstructing genome-wide protein-protein interaction networks using multiple strategies with homologous mapping.
Lo YS; Huang SH; Luo YC; Lin CY; Yang JM
PLoS One; 2015; 10(1):e0116347. PubMed ID: 25602759
[TBL] [Abstract][Full Text] [Related]
20. Evolutionary analysis and interaction prediction for protein-protein interaction network in geometric space.
Huang L; Liao L; Wu CH
PLoS One; 2017; 12(9):e0183495. PubMed ID: 28886027
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]