These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

230 related articles for article (PubMed ID: 23812991)

  • 21. Fold recognition by predicted alignment accuracy.
    Xu J
    IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(2):157-65. PubMed ID: 17044180
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Incorporating Ab Initio energy into threading approaches for protein structure prediction.
    Shao M; Wang S; Wang C; Yuan X; Li SC; Zheng W; Bu D
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S54. PubMed ID: 21342587
    [TBL] [Abstract][Full Text] [Related]  

  • 23. MRFalign: protein homology detection through alignment of Markov random fields.
    Ma J; Wang S; Wang Z; Xu J
    PLoS Comput Biol; 2014 Mar; 10(3):e1003500. PubMed ID: 24675572
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Incremental window-based protein sequence alignment algorithms.
    Rangwala H; Karypis G
    Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts.
    Deng X; Cheng J
    BMC Bioinformatics; 2011 Dec; 12():472. PubMed ID: 22168237
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A multiple-template approach to protein threading.
    Peng J; Xu J
    Proteins; 2011 Jun; 79(6):1930-9. PubMed ID: 21465564
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Optimization of profile-to-profile alignment parameters for one-dimensional threading.
    Gniewek P; Kolinski A; Gront D
    J Comput Biol; 2012 Jul; 19(7):879-86. PubMed ID: 22731622
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Comparative modeling without implicit sequence alignments.
    Kolinski A; Gront D
    Bioinformatics; 2007 Oct; 23(19):2522-7. PubMed ID: 17660201
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Analysis of distance-based protein structure prediction by deep learning in CASP13.
    Xu J; Wang S
    Proteins; 2019 Dec; 87(12):1069-1081. PubMed ID: 31471916
    [TBL] [Abstract][Full Text] [Related]  

  • 30. SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
    Tong J; Pei J; Grishin NV
    BMC Bioinformatics; 2015 Sep; 16(1):282. PubMed ID: 26335387
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SQUARE--determining reliable regions in sequence alignments.
    Tress ML; Graña O; Valencia A
    Bioinformatics; 2004 Apr; 20(6):974-5. PubMed ID: 14764569
    [TBL] [Abstract][Full Text] [Related]  

  • 32. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 33. ThreaDom: extracting protein domain boundary information from multiple threading alignments.
    Xue Z; Xu D; Wang Y; Zhang Y
    Bioinformatics; 2013 Jul; 29(13):i247-56. PubMed ID: 23812990
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Template-based prediction of protein structure with deep learning.
    Zhang H; Shen Y
    BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RaptorX server: a resource for template-based protein structure modeling.
    Källberg M; Margaryan G; Wang S; Ma J; Xu J
    Methods Mol Biol; 2014; 1137():17-27. PubMed ID: 24573471
    [TBL] [Abstract][Full Text] [Related]  

  • 36. NdPASA: a pairwise sequence alignment server for distantly related proteins.
    Li W; Wang J; Feng JA
    Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
    Lin HN; Notredame C; Chang JM; Sung TY; Hsu WL
    PLoS One; 2011; 6(12):e27872. PubMed ID: 22163274
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Predicting reliable regions in protein alignments from sequence profiles.
    Tress ML; Jones D; Valencia A
    J Mol Biol; 2003 Jul; 330(4):705-18. PubMed ID: 12850141
    [TBL] [Abstract][Full Text] [Related]  

  • 39. LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
    Zheng W; Zhang C; Wuyun Q; Pearce R; Li Y; Zhang Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W429-W436. PubMed ID: 31081035
    [TBL] [Abstract][Full Text] [Related]  

  • 40. FragQA: predicting local fragment quality of a sequence-structure alignment.
    Gao X; Bu D; Li SC; Xu J; Li M
    Genome Inform; 2007; 19():27-39. PubMed ID: 18546502
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.