166 related articles for article (PubMed ID: 23812995)
1. Compressive genomics for protein databases.
Daniels NM; Gallant A; Peng J; Cowen LJ; Baym M; Berger B
Bioinformatics; 2013 Jul; 29(13):i283-90. PubMed ID: 23812995
[TBL] [Abstract][Full Text] [Related]
2. Comparing compressed sequences for faster nucleotide BLAST searches.
Cameron M; Williams HE
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):349-64. PubMed ID: 17666756
[TBL] [Abstract][Full Text] [Related]
3. Fast batch searching for protein homology based on compression and clustering.
Ge H; Sun L; Yu J
BMC Bioinformatics; 2017 Nov; 18(1):508. PubMed ID: 29162030
[TBL] [Abstract][Full Text] [Related]
4. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
[TBL] [Abstract][Full Text] [Related]
5. Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix.
Lim K; Yamada KD; Frith MC; Tomii K
J Struct Funct Genomics; 2016 Dec; 17(4):147-154. PubMed ID: 28083762
[TBL] [Abstract][Full Text] [Related]
6. Database similarity searches.
Plewniak F
Methods Mol Biol; 2008; 484():361-78. PubMed ID: 18592192
[TBL] [Abstract][Full Text] [Related]
7. Domain enhanced lookup time accelerated BLAST.
Boratyn GM; Schäffer AA; Agarwala R; Altschul SF; Lipman DJ; Madden TL
Biol Direct; 2012 Apr; 7():12. PubMed ID: 22510480
[TBL] [Abstract][Full Text] [Related]
8. Sequence Similarity Searching.
Hu G; Kurgan L
Curr Protoc Protein Sci; 2019 Feb; 95(1):e71. PubMed ID: 30102464
[TBL] [Abstract][Full Text] [Related]
9. G-BLASTN: accelerating nucleotide alignment by graphics processors.
Zhao K; Chu X
Bioinformatics; 2014 May; 30(10):1384-91. PubMed ID: 24463183
[TBL] [Abstract][Full Text] [Related]
10. A performance enhanced PSI-BLAST based on hybrid alignment.
Li Y; Chia N; Lauria M; Bundschuh R
Bioinformatics; 2011 Jan; 27(1):31-7. PubMed ID: 21115441
[TBL] [Abstract][Full Text] [Related]
11. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.
Ye W; Chen Y; Zhang Y; Xu Y
Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515
[TBL] [Abstract][Full Text] [Related]
12. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Hach F; Numanagic I; Alkan C; Sahinalp SC
Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
[TBL] [Abstract][Full Text] [Related]
13. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
Sauder JM; Arthur JW; Dunbrack RL
Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
[TBL] [Abstract][Full Text] [Related]
14. ProClust: improved clustering of protein sequences with an extended graph-based approach.
Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
[TBL] [Abstract][Full Text] [Related]
15. Improved gapped alignment in BLAST.
Cameron M; Williams HE; Cannane A
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(3):116-29. PubMed ID: 17048387
[TBL] [Abstract][Full Text] [Related]
16. Protein structural similarity search by Ramachandran codes.
Lo WC; Huang PJ; Chang CH; Lyu PC
BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
[TBL] [Abstract][Full Text] [Related]
17. MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
Hauser M; Steinegger M; Söding J
Bioinformatics; 2016 May; 32(9):1323-30. PubMed ID: 26743509
[TBL] [Abstract][Full Text] [Related]
18. BLAST and FASTA similarity searching for multiple sequence alignment.
Pearson WR
Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396
[TBL] [Abstract][Full Text] [Related]
19. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
Shah AR; Oehmen CS; Webb-Robertson BJ
Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
[TBL] [Abstract][Full Text] [Related]
20. HH-suite3 for fast remote homology detection and deep protein annotation.
Steinegger M; Meier M; Mirdita M; Vöhringer H; Haunsberger SJ; Söding J
BMC Bioinformatics; 2019 Sep; 20(1):473. PubMed ID: 31521110
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]