These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 23845136)

  • 1. Analysis and annotation of the hexaploid oat seed transcriptome.
    Gutierrez-Gonzalez JJ; Tu ZJ; Garvin DF
    BMC Genomics; 2013 Jul; 14():471. PubMed ID: 23845136
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed.
    Hu H; Gutierrez-Gonzalez JJ; Liu X; Yeats TH; Garvin DF; Hoekenga OA; Sorrells ME; Gore MA; Jannink JL
    Plant Biotechnol J; 2020 May; 18(5):1211-1222. PubMed ID: 31677224
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcriptome analysis of hexaploid hulless oat in response to salinity stress.
    Wu B; Hu Y; Huo P; Zhang Q; Chen X; Zhang Z
    PLoS One; 2017; 12(2):e0171451. PubMed ID: 28192458
    [TBL] [Abstract][Full Text] [Related]  

  • 4. De Novo Transcriptome Assembly in Polyploid Species.
    Gutierrez-Gonzalez JJ; Garvin DF
    Methods Mol Biol; 2017; 1536():209-221. PubMed ID: 28132153
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Charting oat (Avena sativa) embryo and endosperm transcription factor expression reveals differential expression of potential importance for seed development.
    Kushwaha SK; Grimberg Å; Carlsson AS; Hofvander P
    Mol Genet Genomics; 2019 Oct; 294(5):1183-1197. PubMed ID: 31073872
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Subgenome-specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of oat genome.
    Gutierrez-Gonzalez JJ; Garvin DF
    Plant Biotechnol J; 2016 Nov; 14(11):2147-2157. PubMed ID: 27135276
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data.
    Chopra R; Burow G; Farmer A; Mudge J; Simpson CE; Burow MD
    PLoS One; 2014; 9(12):e115055. PubMed ID: 25551607
    [TBL] [Abstract][Full Text] [Related]  

  • 9. De novo Assembly, Characterization of Immature Seed Transcriptome and Development of Genic-SSR Markers in Black Gram [Vigna mungo (L.) Hepper].
    Souframanien J; Reddy KS
    PLoS One; 2015; 10(6):e0128748. PubMed ID: 26042595
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
    Mbandi SK; Hesse U; van Heusden P; Christoffels A
    BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.
    Maughan PJ; Lee R; Walstead R; Vickerstaff RJ; Fogarty MC; Brouwer CR; Reid RR; Jay JJ; Bekele WA; Jackson EW; Tinker NA; Langdon T; Schlueter JA; Jellen EN
    BMC Biol; 2019 Nov; 17(1):92. PubMed ID: 31757219
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
    Wilhelmsson PKI; Chandler JO; Fernandez-Pozo N; Graeber K; Ullrich KK; Arshad W; Khan S; Hofberger JA; Buchta K; Edger PP; Pires JC; Schranz ME; Leubner-Metzger G; Rensing SA
    BMC Genomics; 2019 Jan; 20(1):95. PubMed ID: 30700268
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exploring triacylglycerol biosynthetic pathway in developing seeds of Chia (Salvia hispanica L.): a transcriptomic approach.
    R V S; Kumari P; Rupwate SD; Rajasekharan R; Srinivasan M
    PLoS One; 2015; 10(4):e0123580. PubMed ID: 25875809
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus.
    Rana SB; Zadlock FJ; Zhang Z; Murphy WR; Bentivegna CS
    PLoS One; 2016; 11(4):e0153104. PubMed ID: 27054874
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reference genome assemblies reveal the origin and evolution of allohexaploid oat.
    Peng Y; Yan H; Guo L; Deng C; Wang C; Wang Y; Kang L; Zhou P; Yu K; Dong X; Liu X; Sun Z; Peng Y; Zhao J; Deng D; Xu Y; Li Y; Jiang Q; Li Y; Wei L; Wang J; Ma J; Hao M; Li W; Kang H; Peng Z; Liu D; Jia J; Zheng Y; Ma T; Wei Y; Lu F; Ren C
    Nat Genet; 2022 Aug; 54(8):1248-1258. PubMed ID: 35851189
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species.
    Madritsch S; Burg A; Sehr EM
    BMC Bioinformatics; 2021 Mar; 22(1):146. PubMed ID: 33752598
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study.
    Zhao QY; Wang Y; Kong YM; Luo D; Li X; Hao P
    BMC Bioinformatics; 2011 Dec; 12 Suppl 14(Suppl 14):S2. PubMed ID: 22373417
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organisms.
    He B; Zhao S; Chen Y; Cao Q; Wei C; Cheng X; Zhang Y
    BMC Genomics; 2015 Feb; 16(1):65. PubMed ID: 25759274
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A study on the genetic relationships of Avena taxa and the origins of hexaploid oat.
    Chew P; Meade K; Hayes A; Harjes C; Bao Y; Beattie AD; Puddephat I; Gusmini G; Tanksley SD
    Theor Appl Genet; 2016 Jul; 129(7):1405-1415. PubMed ID: 27048238
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A high-quality annotated transcriptome of swine peripheral blood.
    Liu H; Smith TPL; Nonneman DJ; Dekkers JCM; Tuggle CK
    BMC Genomics; 2017 Jun; 18(1):479. PubMed ID: 28646867
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.