These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 23855669)

  • 1. Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis.
    Matsuzaki Y; Ohue M; Uchikoga N; Akiyama Y
    Protein Pept Lett; 2014; 21(8):790-8. PubMed ID: 23855669
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.
    Ohue M; Matsuzaki Y; Uchikoga N; Ishida T; Akiyama Y
    Protein Pept Lett; 2014; 21(8):766-78. PubMed ID: 23855673
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions.
    Hayashi T; Matsuzaki Y; Yanagisawa K; Ohue M; Akiyama Y
    BMC Bioinformatics; 2018 May; 19(Suppl 4):62. PubMed ID: 29745830
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.
    Maheshwari S; Brylinski M
    BMC Struct Biol; 2015 Nov; 15():23. PubMed ID: 26597230
    [TBL] [Abstract][Full Text] [Related]  

  • 5. In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis.
    Matsuzaki Y; Matsuzaki Y; Sato T; Akiyama Y
    J Bioinform Comput Biol; 2009 Dec; 7(6):991-1012. PubMed ID: 20014475
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.
    Zhou H; Rezaei J; Hugo W; Gao S; Jin J; Fan M; Yong CH; Wozniak M; Wong L
    BMC Syst Biol; 2013; 7 Suppl 6(Suppl 6):S6. PubMed ID: 24564941
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Docking Foundations: From Rigid to Flexible Docking.
    Kuder KJ
    Methods Mol Biol; 2024; 2780():3-14. PubMed ID: 38987460
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Refinement of pairwise potentials via logistic regression to score protein-protein interactions.
    Tanemura KA; Pei J; Merz KM
    Proteins; 2020 Dec; 88(12):1559-1568. PubMed ID: 32729132
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Software and Databases for Protein-Protein Docking.
    Jarończyk M; Abagyan R; Totrov M
    Methods Mol Biol; 2024; 2780():129-138. PubMed ID: 38987467
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessment of Protein-Protein Docking Models Using Deep Learning.
    Zhang Y; Wang X; Zhang Z; Huang Y; Kihara D
    Methods Mol Biol; 2024; 2780():149-162. PubMed ID: 38987469
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information.
    Tuncbag N; Keskin O; Nussinov R; Gursoy A
    Methods Mol Biol; 2017; 1558():255-270. PubMed ID: 28150242
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular Dynamics Simulations in Protein-Protein Docking.
    Cieślak D; Kabelka I; Bartuzi D
    Methods Mol Biol; 2024; 2780():91-106. PubMed ID: 38987465
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The scoring bias in reverse docking and the score normalization strategy to improve success rate of target fishing.
    Luo Q; Zhao L; Hu J; Jin H; Liu Z; Zhang L
    PLoS One; 2017; 12(2):e0171433. PubMed ID: 28196116
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Using the Gene Ontology tool to produce de novo protein-protein interaction networks with IS_A relationship.
    Oliveira GS; Santos AR
    Genet Mol Res; 2016 Dec; 15(4):. PubMed ID: 28002604
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces.
    Chen CT; Peng HP; Jian JW; Tsai KC; Chang JY; Yang EW; Chen JB; Ho SY; Hsu WL; Yang AS
    PLoS One; 2012; 7(6):e37706. PubMed ID: 22701576
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
    Xu X; Qiu L; Yan C; Ma Z; Grinter SZ; Zou X
    Proteins; 2017 Mar; 85(3):424-434. PubMed ID: 27802576
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Recent Advances in Protein-Protein Docking.
    Zhang Q; Feng T; Xu L; Sun H; Pan P; Li Y; Li D; Hou T
    Curr Drug Targets; 2016; 17(14):1586-1594. PubMed ID: 26758670
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
    Vreven T; Pierce BG; Borrman TM; Weng Z
    Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
    [TBL] [Abstract][Full Text] [Related]  

  • 19. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
    Jiménez-García B; Pons C; Fernández-Recio J
    Bioinformatics; 2013 Jul; 29(13):1698-9. PubMed ID: 23661696
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ranking multiple docking solutions based on the conservation of inter-residue contacts.
    Oliva R; Vangone A; Cavallo L
    Proteins; 2013 Sep; 81(9):1571-84. PubMed ID: 23609916
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.