BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 23859268)

  • 1. Reconn: a cytoscape plug-in for exploring and visualizing reactome.
    Ligtenberg WP; Bošnački D; Hilbers PA
    J Bioinform Comput Biol; 2013 Aug; 11(4):1350004. PubMed ID: 23859268
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Interleukins and their signaling pathways in the Reactome biological pathway database.
    Jupe S; Ray K; Roca CD; Varusai T; Shamovsky V; Stein L; D'Eustachio P; Hermjakob H
    J Allergy Clin Immunol; 2018 Apr; 141(4):1411-1416. PubMed ID: 29378288
    [TBL] [Abstract][Full Text] [Related]  

  • 3. cPath: open source software for collecting, storing, and querying biological pathways.
    Cerami EG; Bader GD; Gross BE; Sander C
    BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reactome diagram viewer: data structures and strategies to boost performance.
    Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H
    Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Reactome BioMart.
    Haw RA; Croft D; Yung CK; Ndegwa N; D'Eustachio P; Hermjakob H; Stein LD
    Database (Oxford); 2011; 2011():bar031. PubMed ID: 22012987
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Functional Interaction Network Construction and Analysis for Disease Discovery.
    Wu G; Haw R
    Methods Mol Biol; 2017; 1558():235-253. PubMed ID: 28150241
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Reactome from a WikiPathways Perspective.
    Bohler A; Wu G; Kutmon M; Pradhana LA; Coort SL; Hanspers K; Haw R; Pico AR; Evelo CT
    PLoS Comput Biol; 2016 May; 12(5):e1004941. PubMed ID: 27203685
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PathRings: a web-based tool for exploration of ortholog and expression data in biological pathways.
    Zhu Y; Sun L; Garbarino A; Schmidt C; Fang J; Chen J
    BMC Bioinformatics; 2015 May; 16(1):165. PubMed ID: 25982732
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reactome: a database of reactions, pathways and biological processes.
    Croft D; O'Kelly G; Wu G; Haw R; Gillespie M; Matthews L; Caudy M; Garapati P; Gopinath G; Jassal B; Jupe S; Kalatskaya I; Mahajan S; May B; Ndegwa N; Schmidt E; Shamovsky V; Yung C; Birney E; Hermjakob H; D'Eustachio P; Stein L
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D691-7. PubMed ID: 21067998
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reactome: a knowledgebase of biological pathways.
    Joshi-Tope G; Gillespie M; Vastrik I; D'Eustachio P; Schmidt E; de Bono B; Jassal B; Gopinath GR; Wu GR; Matthews L; Lewis S; Birney E; Stein L
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D428-32. PubMed ID: 15608231
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reactome: a knowledge base of biologic pathways and processes.
    Vastrik I; D'Eustachio P; Schmidt E; Gopinath G; Croft D; de Bono B; Gillespie M; Jassal B; Lewis S; Matthews L; Wu G; Birney E; Stein L
    Genome Biol; 2007; 8(3):R39. PubMed ID: 17367534
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
    König M; Holzhütter HG
    Genome Inform; 2010; 24():96-103. PubMed ID: 22081592
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ChiBE: interactive visualization and manipulation of BioPAX pathway models.
    Babur O; Dogrusoz U; Demir E; Sander C
    Bioinformatics; 2010 Feb; 26(3):429-31. PubMed ID: 20007251
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
    Pitkänen E; Akerlund A; Rantanen A; Jouhten P; Ukkonen E
    J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134058
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A survey of metabolic databases emphasizing the MetaCyc family.
    Karp PD; Caspi R
    Arch Toxicol; 2011 Sep; 85(9):1015-33. PubMed ID: 21523460
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reactome pathway analysis to enrich biological discovery in proteomics data sets.
    Haw R; Hermjakob H; D'Eustachio P; Stein L
    Proteomics; 2011 Sep; 11(18):3598-613. PubMed ID: 21751369
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
    Doncheva NT; Morris JH; Gorodkin J; Jensen LJ
    J Proteome Res; 2019 Feb; 18(2):623-632. PubMed ID: 30450911
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Installing a local copy of the Reactome Web site and database.
    Vastrik I
    Curr Protoc Bioinformatics; 2008 Mar; Chapter 9():Unit 9.10. PubMed ID: 18428688
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reactome graph database: Efficient access to complex pathway data.
    Fabregat A; Korninger F; Viteri G; Sidiropoulos K; Marin-Garcia P; Ping P; Wu G; Stein L; D'Eustachio P; Hermjakob H
    PLoS Comput Biol; 2018 Jan; 14(1):e1005968. PubMed ID: 29377902
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HPD: an online integrated human pathway database enabling systems biology studies.
    Chowbina SR; Wu X; Zhang F; Li PM; Pandey R; Kasamsetty HN; Chen JY
    BMC Bioinformatics; 2009 Oct; 10 Suppl 11(Suppl 11):S5. PubMed ID: 19811689
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.