BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 23861564)

  • 1. An alignment-free domain architecture similarity search (ADASS) algorithm for inferring homology between multi-domain proteins.
    Syamaladevi DP; Joshi A; Sowdhamini R
    Bioinformation; 2013; 9(10):491-9. PubMed ID: 23861564
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein comparison at the domain architecture level.
    Lee B; Lee D
    BMC Bioinformatics; 2009 Dec; 10 Suppl 15(Suppl 15):S5. PubMed ID: 19958515
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FACT: functional annotation transfer between proteins with similar feature architectures.
    Koestler T; von Haeseler A; Ebersberger I
    BMC Bioinformatics; 2010 Aug; 11():417. PubMed ID: 20696036
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture.
    Lee B; Lee D
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W60-4. PubMed ID: 18411203
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence similarity network reveals common ancestry of multidomain proteins.
    Song N; Joseph JM; Davis GB; Durand D
    PLoS Comput Biol; 2008 May; 4(4):e1000063. PubMed ID: 18475320
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing.
    Abnousi A; Broschat SL; Kalyanaraman A
    BMC Bioinformatics; 2018 Mar; 19(1):83. PubMed ID: 29506470
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Clustering of multi-domain protein sequences.
    Mehrotra P; Ami VKG; Srinivasan N
    Proteins; 2018 Jul; 86(7):759-776. PubMed ID: 29675880
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns.
    Landon MR; Lancia DR; Clodfelter KH; Vajda S
    J Mol Graph Model; 2006 May; 24(6):426-33. PubMed ID: 16221553
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rapid similarity search of proteins using alignments of domain arrangements.
    Terrapon N; Weiner J; Grath S; Moore AD; Bornberg-Bauer E
    Bioinformatics; 2014 Jan; 30(2):274-81. PubMed ID: 23828785
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function.
    Krishnamurthy N; Brown D; Sjölander K
    BMC Evol Biol; 2007 Feb; 7 Suppl 1(Suppl 1):S12. PubMed ID: 17288570
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Domain architecture comparison for multidomain homology identification.
    Song N; Sedgewick RD; Durand D
    J Comput Biol; 2007 May; 14(4):496-516. PubMed ID: 17572026
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FAS: assessing the similarity between proteins using multi-layered feature architectures.
    Dosch J; Bergmann H; Tran V; Ebersberger I
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37084276
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks.
    Ma Q; Chirn GW; Cai R; Szustakowski JD; Nirmala NR
    BMC Bioinformatics; 2005 Oct; 6():242. PubMed ID: 16202129
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins.
    Balaji S; Srinivasan N
    Protein Eng; 2001 Apr; 14(4):219-26. PubMed ID: 11391013
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Domain architecture conservation in orthologs.
    Forslund K; Pekkari I; Sonnhammer EL
    BMC Bioinformatics; 2011 Aug; 12():326. PubMed ID: 21819573
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Clustering protein sequences--structure prediction by transitive homology.
    Bolten E; Schliep A; Schneckener S; Schomburg D; Schrader R
    Bioinformatics; 2001 Oct; 17(10):935-41. PubMed ID: 11673238
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Classification of protein kinases on the basis of both kinase and non-kinase regions.
    Martin J; Anamika K; Srinivasan N
    PLoS One; 2010 Sep; 5(9):e12460. PubMed ID: 20856812
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
    Gupta K; Thomas D; Vidya SV; Venkatesh KV; Ramakumar S
    BMC Bioinformatics; 2005 Apr; 6():105. PubMed ID: 15850477
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.