BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 23874386)

  • 1. Exploring the adenylation domain repertoire of nonribosomal peptide synthetases using an ensemble of sequence-search methods.
    Agüero-Chapin G; Molina-Ruiz R; Maldonado E; de la Riva G; Sánchez-Rodríguez A; Vasconcelos V; Antunes A
    PLoS One; 2013; 8(7):e65926. PubMed ID: 23874386
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains.
    Agüero-Chapin G; Pérez-Machado G; Sánchez-Rodríguez A; Santos MM; Antunes A
    Methods Mol Biol; 2016; 1401():253-72. PubMed ID: 26831713
    [TBL] [Abstract][Full Text] [Related]  

  • 3. In silico analysis of the adenylation domains of the freestanding enzymes belonging to the eucaryotic nonribosomal peptide synthetase-like family.
    Di Vincenzo L; Grgurina I; Pascarella S
    FEBS J; 2005 Feb; 272(4):929-41. PubMed ID: 15691327
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TI2BioP: Topological Indices to BioPolymers. Its practical use to unravel cryptic bacteriocin-like domains.
    Agüero-Chapin G; Pérez-Machado G; Molina-Ruiz R; Pérez-Castillo Y; Morales-Helguera A; Vasconcelos V; Antunes A
    Amino Acids; 2011 Feb; 40(2):431-42. PubMed ID: 20563611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing.
    Baranašić D; Zucko J; Diminic J; Gacesa R; Long PF; Cullum J; Hranueli D; Starcevic A
    J Ind Microbiol Biotechnol; 2014 Feb; 41(2):461-7. PubMed ID: 24104398
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Characterization of Nonribosomal Peptide Synthetases with NRPSsp.
    Prieto C
    Methods Mol Biol; 2016; 1401():273-8. PubMed ID: 26831714
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of the substrate for nonribosomal peptide synthetase (NRPS) adenylation domains by virtual screening.
    Lee TV; Johnson RD; Arcus VL; Lott JS
    Proteins; 2015 Nov; 83(11):2052-66. PubMed ID: 26358936
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploring the domain structure of modular nonribosomal peptide synthetases.
    Weber T; Marahiel MA
    Structure; 2001 Jan; 9(1):R3-9. PubMed ID: 11342140
    [TBL] [Abstract][Full Text] [Related]  

  • 9. In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites.
    Ansari MZ; Sharma J; Gokhale RS; Mohanty D
    BMC Bioinformatics; 2008 Oct; 9():454. PubMed ID: 18950525
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structure of PA1221, a nonribosomal peptide synthetase containing adenylation and peptidyl carrier protein domains.
    Mitchell CA; Shi C; Aldrich CC; Gulick AM
    Biochemistry; 2012 Apr; 51(15):3252-63. PubMed ID: 22452656
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs).
    Rausch C; Weber T; Kohlbacher O; Wohlleben W; Huson DH
    Nucleic Acids Res; 2005; 33(18):5799-808. PubMed ID: 16221976
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Adenylation Domains in Nonribosomal Peptide Engineering.
    Stanišić A; Kries H
    Chembiochem; 2019 Jun; 20(11):1347-1356. PubMed ID: 30629787
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Substrate selection of adenylation domains for nonribosomal peptide synthetase (NRPS) in bacillamide C biosynthesis by marine Bacillus atrophaeus C89.
    Zhang F; Wang Y; Jiang Q; Chen Q; Karthik L; Zhao YL; Li Z
    J Ind Microbiol Biotechnol; 2018 May; 45(5):335-344. PubMed ID: 29572612
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structures of a Nonribosomal Peptide Synthetase Module Bound to MbtH-like Proteins Support a Highly Dynamic Domain Architecture.
    Miller BR; Drake EJ; Shi C; Aldrich CC; Gulick AM
    J Biol Chem; 2016 Oct; 291(43):22559-22571. PubMed ID: 27597544
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure of a eukaryotic nonribosomal peptide synthetase adenylation domain that activates a large hydroxamate amino acid in siderophore biosynthesis.
    Lee TV; Johnson LJ; Johnson RD; Koulman A; Lane GA; Lott JS; Arcus VL
    J Biol Chem; 2010 Jan; 285(4):2415-27. PubMed ID: 19923209
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases.
    May JJ; Kessler N; Marahiel MA; Stubbs MT
    Proc Natl Acad Sci U S A; 2002 Sep; 99(19):12120-5. PubMed ID: 12221282
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Functional profiling of adenylation domains in nonribosomal peptide synthetases by competitive activity-based protein profiling.
    Kasai S; Konno S; Ishikawa F; Kakeya H
    Chem Commun (Camb); 2015 Nov; 51(87):15764-7. PubMed ID: 26365322
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Substrate specificity-conferring regions of the nonribosomal peptide synthetase adenylation domains involved in albicidin pathotoxin biosynthesis are highly conserved within the species Xanthomonas albilineans.
    Renier A; Vivien E; Cociancich S; Letourmy P; Perrier X; Rott PC; Royer M
    Appl Environ Microbiol; 2007 Sep; 73(17):5523-30. PubMed ID: 17630307
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dipeptide synthesis by internal adenylation domains of a multidomain enzyme involved in nonribosomal peptide synthesis.
    Abe T; Kobayashi K; Kawamura S; Sakaguchi T; Shiiba K; Kobayashi M
    J Gen Appl Microbiol; 2019 Mar; 65(1):1-10. PubMed ID: 29899192
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Active site-directed proteomic probes for adenylation domains in nonribosomal peptide synthetases.
    Konno S; Ishikawa F; Suzuki T; Dohmae N; Burkart MD; Kakeya H
    Chem Commun (Camb); 2015 Feb; 51(12):2262-5. PubMed ID: 25563804
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.